{"id":"https://openalex.org/W2937123516","doi":"https://doi.org/10.1109/icassp.2019.8683119","title":"Strip the Stripes: Artifact Detection and Removal for Scanning Electron Microscopy Imaging","display_name":"Strip the Stripes: Artifact Detection and Removal for Scanning Electron Microscopy Imaging","publication_year":2019,"publication_date":"2019-04-17","ids":{"openalex":"https://openalex.org/W2937123516","doi":"https://doi.org/10.1109/icassp.2019.8683119","mag":"2937123516"},"language":"en","primary_location":{"id":"doi:10.1109/icassp.2019.8683119","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp.2019.8683119","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ICASSP 2019 - 2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013826136","display_name":"Amirhossein Khalilian-Gourtani","orcid":"https://orcid.org/0000-0003-1376-9583"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Amirhossein Khalilian-Gourtani","raw_affiliation_strings":["Electrical and Computer Engineering Department, New York University, Brooklyn, NY, 11201","Electrical and Computer Engineering Department, New York University, Brooklyn, NY"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering Department, New York University, Brooklyn, NY, 11201","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, New York University, Brooklyn, NY","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005986086","display_name":"Mariano Tepper","orcid":"https://orcid.org/0000-0001-6053-925X"},"institutions":[{"id":"https://openalex.org/I4210153546","display_name":"Flatiron Health (United States)","ror":"https://ror.org/0508h6p74","country_code":"US","type":"company","lineage":["https://openalex.org/I4210153546"]},{"id":"https://openalex.org/I4387153999","display_name":"Flatiron Institute","ror":"https://ror.org/00sekdz59","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4210107338","https://openalex.org/I4387153999"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mariano Tepper","raw_affiliation_strings":["Center for Computational Biology, Flatiron Institute, New York, NY, 10010","Center for Computational Biology, Flatiron Institute, New York, NY"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology, Flatiron Institute, New York, NY, 10010","institution_ids":["https://openalex.org/I4210153546","https://openalex.org/I4387153999"]},{"raw_affiliation_string":"Center for Computational Biology, Flatiron Institute, New York, NY","institution_ids":["https://openalex.org/I4210153546","https://openalex.org/I4387153999"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018787411","display_name":"Victor Minden","orcid":"https://orcid.org/0009-0006-9084-6289"},"institutions":[{"id":"https://openalex.org/I4387153999","display_name":"Flatiron Institute","ror":"https://ror.org/00sekdz59","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4210107338","https://openalex.org/I4387153999"]},{"id":"https://openalex.org/I4210153546","display_name":"Flatiron Health (United States)","ror":"https://ror.org/0508h6p74","country_code":"US","type":"company","lineage":["https://openalex.org/I4210153546"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Victor Minden","raw_affiliation_strings":["Center for Computational Biology, Flatiron Institute, New York, NY, 10010","Center for Computational Biology, Flatiron Institute, New York, NY"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology, Flatiron Institute, New York, NY, 10010","institution_ids":["https://openalex.org/I4210153546","https://openalex.org/I4387153999"]},{"raw_affiliation_string":"Center for Computational Biology, Flatiron Institute, New York, NY","institution_ids":["https://openalex.org/I4210153546","https://openalex.org/I4387153999"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062874541","display_name":"Dmitri B. Chklovskii","orcid":"https://orcid.org/0000-0002-4781-2546"},"institutions":[{"id":"https://openalex.org/I4210153546","display_name":"Flatiron Health (United States)","ror":"https://ror.org/0508h6p74","country_code":"US","type":"company","lineage":["https://openalex.org/I4210153546"]},{"id":"https://openalex.org/I4387153999","display_name":"Flatiron Institute","ror":"https://ror.org/00sekdz59","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4210107338","https://openalex.org/I4387153999"]},{"id":"https://openalex.org/I4210086933","display_name":"NYU Langone Health","ror":"https://ror.org/005dvqh91","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210086933"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dmitri B. Chklovskii","raw_affiliation_strings":["Center for Computational Biology, Flatiron Institute, New York, NY, 10010","NYU Langone Medical Center, Neuroscience Institute, New York, NY"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology, Flatiron Institute, New York, NY, 10010","institution_ids":["https://openalex.org/I4210153546","https://openalex.org/I4387153999"]},{"raw_affiliation_string":"NYU Langone Medical Center, Neuroscience Institute, New York, NY","institution_ids":["https://openalex.org/I4210086933"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5013826136"],"corresponding_institution_ids":["https://openalex.org/I57206974"],"apc_list":null,"apc_paid":null,"fwci":0.5051,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.60279392,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"1060","last_page":"1064"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12039","display_name":"Electron and X-Ray Spectroscopy Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2508","display_name":"Surfaces, Coatings and Films"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12039","display_name":"Electron and X-Ray Spectroscopy Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2508","display_name":"Surfaces, Coatings and Films"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11338","display_name":"Advancements in Photolithography Techniques","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artifact","display_name":"Artifact (error)","score":0.6792146563529968},{"id":"https://openalex.org/keywords/scanning-electron-microscope","display_name":"Scanning electron microscope","score":0.6529661417007446},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.5375041961669922},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.5078104138374329},{"id":"https://openalex.org/keywords/electron-microscope","display_name":"Electron microscope","score":0.4288637638092041},{"id":"https://openalex.org/keywords/scanning-confocal-electron-microscopy","display_name":"Scanning confocal electron microscopy","score":0.42614224553108215},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3722573518753052},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.37132227420806885},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.35874876379966736},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.334928423166275},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.19793987274169922}],"concepts":[{"id":"https://openalex.org/C2779010991","wikidata":"https://www.wikidata.org/wiki/Q2720909","display_name":"Artifact (error)","level":2,"score":0.6792146563529968},{"id":"https://openalex.org/C26771246","wikidata":"https://www.wikidata.org/wiki/Q321095","display_name":"Scanning electron microscope","level":2,"score":0.6529661417007446},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.5375041961669922},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.5078104138374329},{"id":"https://openalex.org/C93877712","wikidata":"https://www.wikidata.org/wiki/Q132560","display_name":"Electron microscope","level":2,"score":0.4288637638092041},{"id":"https://openalex.org/C187921700","wikidata":"https://www.wikidata.org/wiki/Q7430074","display_name":"Scanning confocal electron microscopy","level":3,"score":0.42614224553108215},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3722573518753052},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.37132227420806885},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35874876379966736},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.334928423166275},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.19793987274169922}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icassp.2019.8683119","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp.2019.8683119","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ICASSP 2019 - 2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/11","score":0.7200000286102295,"display_name":"Sustainable cities and communities"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W97246116","https://openalex.org/W1946620893","https://openalex.org/W1967231175","https://openalex.org/W2024661139","https://openalex.org/W2067291138","https://openalex.org/W2067689904","https://openalex.org/W2083799719","https://openalex.org/W2115528090","https://openalex.org/W2136604679","https://openalex.org/W2164278908","https://openalex.org/W2515271729","https://openalex.org/W2543143563","https://openalex.org/W2612564956","https://openalex.org/W4211114670","https://openalex.org/W4292363360"],"related_works":["https://openalex.org/W2106173226","https://openalex.org/W3111994488","https://openalex.org/W1520158892","https://openalex.org/W168865677","https://openalex.org/W2072424450","https://openalex.org/W2093554013","https://openalex.org/W1994873695","https://openalex.org/W1991238681","https://openalex.org/W2083448735","https://openalex.org/W1997898238"],"abstract_inverted_index":{"Scanning":[0],"Electron":[1],"Microscopy":[2],"(SEM)":[3],"is":[4],"a":[5,42,88,99],"popular":[6],"high":[7],"resolution":[8],"imaging":[9],"modality":[10],"for":[11,69,91],"biological":[12],"samples":[13],"that":[14],"has":[15],"recently":[16],"been":[17],"applied":[18],"to":[19,65],"neural":[20],"circuit":[21],"reconstruction.":[22],"For":[23],"this":[24,84],"application,":[25],"relatively":[26],"large":[27],"volumes":[28],"are":[29],"imaged":[30],"by":[31,86],"repeatedly":[32],"ablating":[33],"away":[34],"the":[35,39,56,76,92,103],"exposed":[36],"surface":[37],"of":[38,55,102],"volume":[40],"with":[41],"focused":[43],"ion":[44],"beam":[45],"(FIB),":[46],"which":[47],"can":[48],"cause":[49],"beam-aligned":[50],"striping":[51,71],"artifacts":[52,72],"in":[53],"images":[54],"remaining":[57],"layers.":[58],"We":[59],"present":[60],"an":[61],"automatic":[62],"pipeline":[63],"designed":[64],"detect":[66],"and":[67,96,116],"correct":[68],"such":[70],"while":[73],"minimally":[74],"degrading":[75],"unknown":[77],"artifact-free":[78],"image.":[79],"The":[80],"proposed":[81],"method":[82],"addresses":[83],"problem":[85,106],"computing":[87],"data-driven":[89],"mask":[90],"corrupted":[93],"frequency":[94],"band":[95],"subsequently":[97],"solving":[98],"variational":[100],"formulation":[101],"image":[104],"reconstruction":[105],"using":[107],"efficient":[108],"methods":[109],"from":[110],"convex":[111],"optimization.":[112],"Results":[113],"on":[114],"simulated":[115],"real":[117],"data":[118],"show":[119],"state-of-the-art":[120],"denoising":[121],"performance.":[122]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
