{"id":"https://openalex.org/W2136701675","doi":"https://doi.org/10.1109/icassp.2012.6288356","title":"GOASVM: Protein subcellular localization prediction based on Gene ontology annotation and SVM","display_name":"GOASVM: Protein subcellular localization prediction based on Gene ontology annotation and SVM","publication_year":2012,"publication_date":"2012-03-01","ids":{"openalex":"https://openalex.org/W2136701675","doi":"https://doi.org/10.1109/icassp.2012.6288356","mag":"2136701675"},"language":"en","primary_location":{"id":"doi:10.1109/icassp.2012.6288356","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp.2012.6288356","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065053020","display_name":"Shibiao Wan","orcid":"https://orcid.org/0000-0003-0661-2684"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Shibiao Wan","raw_affiliation_strings":["Department of Electronic and Information Engineering, Hong Kong Polytechnic University, Hong Kong, China","Dept. of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, China"],"affiliations":[{"raw_affiliation_string":"Department of Electronic and Information Engineering, Hong Kong Polytechnic University, Hong Kong, China","institution_ids":["https://openalex.org/I14243506"]},{"raw_affiliation_string":"Dept. of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, China","institution_ids":["https://openalex.org/I14243506"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068768998","display_name":"Man\u2010Wai Mak","orcid":"https://orcid.org/0000-0001-8854-3760"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Man-Wai Mak","raw_affiliation_strings":["Department of Electronic and Information Engineering, Hong Kong Polytechnic University, Hong Kong, China","Dept. of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, China"],"affiliations":[{"raw_affiliation_string":"Department of Electronic and Information Engineering, Hong Kong Polytechnic University, Hong Kong, China","institution_ids":["https://openalex.org/I14243506"]},{"raw_affiliation_string":"Dept. of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, China","institution_ids":["https://openalex.org/I14243506"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072714962","display_name":"Sun\u2010Yuan Kung","orcid":"https://orcid.org/0000-0002-7314-0720"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sun-Yuan Kung","raw_affiliation_strings":["Department of Electrical Engineering, Princeton University, NJ, USA","[Department of Electrical Engineering, Princeton University, New Jersey, USA]"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Princeton University, NJ, USA","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"[Department of Electrical Engineering, Princeton University, New Jersey, USA]","institution_ids":["https://openalex.org/I20089843"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065053020"],"corresponding_institution_ids":["https://openalex.org/I14243506"],"apc_list":null,"apc_paid":null,"fwci":1.0757,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.76576899,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"2229","last_page":"2232"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.7906389236450195},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6989115476608276},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.669090986251831},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.6058313846588135},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.561987042427063},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5446727275848389},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5308035016059875},{"id":"https://openalex.org/keywords/subcellular-localization","display_name":"Subcellular localization","score":0.4541241526603699},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4472646117210388},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4155998229980469},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3773903250694275},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2845304012298584},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16206622123718262}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.7906389236450195},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6989115476608276},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.669090986251831},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.6058313846588135},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.561987042427063},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5446727275848389},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5308035016059875},{"id":"https://openalex.org/C2776879804","wikidata":"https://www.wikidata.org/wiki/Q7630919","display_name":"Subcellular localization","level":3,"score":0.4541241526603699},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4472646117210388},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4155998229980469},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3773903250694275},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2845304012298584},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16206622123718262},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/icassp.2012.6288356","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp.2012.6288356","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.308.7278","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.308.7278","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.eie.polyu.edu.hk/~mwmak/papers/icassp12a.pdf","raw_type":"text"},{"id":"pmh:oai:ira.lib.polyu.edu.hk:10397/34223","is_oa":false,"landing_page_url":"http://hdl.handle.net/10397/34223","pdf_url":null,"source":{"id":"https://openalex.org/S4306400205","display_name":"PolyU Institutional Research Archive (Hong Kong Polytechnic University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I14243506","host_organization_name":"Hong Kong Polytechnic University","host_organization_lineage":["https://openalex.org/I14243506"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.47999998927116394,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1491250132","https://openalex.org/W1979975413","https://openalex.org/W2010211703","https://openalex.org/W2036248751","https://openalex.org/W2043976158","https://openalex.org/W2053963319","https://openalex.org/W2055043387","https://openalex.org/W2056146000","https://openalex.org/W2082605863","https://openalex.org/W2089047063","https://openalex.org/W2101595316","https://openalex.org/W2106181875","https://openalex.org/W2124306486","https://openalex.org/W2127103767","https://openalex.org/W2145957695","https://openalex.org/W2152458080","https://openalex.org/W2158714788","https://openalex.org/W2169043568","https://openalex.org/W2170700642","https://openalex.org/W4236236547","https://openalex.org/W6645139511","https://openalex.org/W6675740764"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W166669457","https://openalex.org/W2085255321","https://openalex.org/W2378433676","https://openalex.org/W2794019507","https://openalex.org/W1966526845"],"abstract_inverted_index":{"Protein":[0],"subcellular":[1,33],"localization":[2],"is":[3,123,140],"an":[4,118],"essential":[5],"step":[6],"to":[7,11,30,62,79,97,143],"annotate":[8],"proteins":[9,54,111],"and":[10,47],"design":[12],"drugs.":[13],"This":[14],"paper":[15,92],"proposes":[16],"a":[17,44,71,136],"functional-domain":[18],"based":[19,130],"method-GOASVM-by":[20],"making":[21],"full":[22],"use":[23],"of":[24,35,43,52,70,73,109,120],"Gene":[25],"Ontology":[26],"Annotation":[27],"(GOA)":[28],"database":[29],"predict":[31],"the":[32,39,48,59,65,81,99,107,113,132,144],"locations":[34],"proteins.":[36],"GOASVM":[37,139],"uses":[38],"accession":[40,49],"number":[41],"(AC)":[42],"query":[45,60,114],"protein":[46],"numbers":[50],"(ACs)":[51],"homologous":[53,110],"returned":[55],"from":[56],"PSI-BLAST":[57],"as":[58,112],"strings":[61,115],"search":[63],"against":[64],"GOA":[66],"database.":[67],"The":[68,91],"occurrences":[69],"set":[72],"predefined":[74],"GO":[75,82,100],"terms":[76],"are":[77],"used":[78],"construct":[80],"vectors":[83],"for":[84],"classification":[85],"by":[86],"support":[87],"vector":[88],"machines":[89],"(SVMs).":[90],"investigated":[93],"two":[94],"different":[95],"approaches":[96],"constructing":[98],"vectors.":[101],"Experimental":[102],"results":[103,129],"suggest":[104],"that":[105],"using":[106],"ACs":[108],"can":[116],"achieve":[117],"accuracy":[119],"94.68%,":[121],"which":[122],"significantly":[124],"higher":[125],"than":[126],"all":[127],"published":[128],"on":[131],"same":[133],"dataset.":[134],"As":[135],"user-friendly":[137],"web-server,":[138],"freely":[141],"accessible":[142],"public":[145],"at":[146],"http://bioinfo.eie.polyu.edu.hk/mGoaSvmServer/GOASVM.html.":[147]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}