{"id":"https://openalex.org/W2002995246","doi":"https://doi.org/10.1109/icassp.2010.5495708","title":"Time-frequency based biological sequence querying","display_name":"Time-frequency based biological sequence querying","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2002995246","doi":"https://doi.org/10.1109/icassp.2010.5495708","mag":"2002995246"},"language":"en","primary_location":{"id":"doi:10.1109/icassp.2010.5495708","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp.2010.5495708","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Acoustics, Speech and Signal Processing","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069716320","display_name":"Lakshminarayan Ravichandran","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L. Ravichandran","raw_affiliation_strings":["SenSIP Center, School of ECEE, Arizona State University, Tempe, AZ, USA","SenSIP Center, School of ECEE, Arizona State University, Tempe, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SenSIP Center, School of ECEE, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"SenSIP Center, School of ECEE, Arizona State University, Tempe, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069246416","display_name":"Antonia Papandreou\u2010Suppappola","orcid":"https://orcid.org/0000-0002-5223-6256"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Papandreou-Suppappola","raw_affiliation_strings":["SenSIP Center, School of ECEE, Arizona State University, Tempe, AZ, USA","SenSIP Center, School of ECEE, Arizona State University, Tempe, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SenSIP Center, School of ECEE, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"SenSIP Center, School of ECEE, Arizona State University, Tempe, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074371899","display_name":"Andreas Spanias","orcid":"https://orcid.org/0000-0003-0306-9348"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Spanias","raw_affiliation_strings":["SenSIP Center, School of ECEE, Arizona State University, Tempe, AZ, USA","SenSIP Center, School of ECEE, Arizona State University, Tempe, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SenSIP Center, School of ECEE, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"SenSIP Center, School of ECEE, Arizona State University, Tempe, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038915978","display_name":"Zo\u00e9 Lacroix","orcid":null},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Z. Lacroix","raw_affiliation_strings":["Translational Genomics Research Institute Phoenix, Scottsdale, AZ, USA","SenSIP Center, School of ECEE, Arizona State University, Tempe, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Genomics Research Institute Phoenix, Scottsdale, AZ, USA","institution_ids":["https://openalex.org/I1284308235"]},{"raw_affiliation_string":"SenSIP Center, School of ECEE, Arizona State University, Tempe, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110218857","display_name":"Christophe Legendre","orcid":null},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Legendre","raw_affiliation_strings":["SenSIP Center, School of ECEE, Arizona State University, Tempe, AZ, USA","Translational Genomics Research Institute (TGen), Scottsdale, AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SenSIP Center, School of ECEE, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"Translational Genomics Research Institute (TGen), Scottsdale, AZ, USA","institution_ids":["https://openalex.org/I1284308235"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"16","issue":null,"first_page":"4174","last_page":"4177"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9710999727249146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.7321838140487671},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.726662814617157},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5420059561729431},{"id":"https://openalex.org/keywords/position","display_name":"Position (finance)","score":0.4364437460899353},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.43332260847091675},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4318588674068451},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3392260670661926},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2386588454246521},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09148573875427246}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.7321838140487671},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.726662814617157},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5420059561729431},{"id":"https://openalex.org/C198082294","wikidata":"https://www.wikidata.org/wiki/Q3399648","display_name":"Position (finance)","level":2,"score":0.4364437460899353},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.43332260847091675},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4318588674068451},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3392260670661926},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2386588454246521},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09148573875427246},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icassp.2010.5495708","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp.2010.5495708","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Acoustics, Speech and Signal Processing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1481866092","https://openalex.org/W1489692150","https://openalex.org/W1771595819","https://openalex.org/W2055043387","https://openalex.org/W2074231493","https://openalex.org/W2079571677","https://openalex.org/W2084175832","https://openalex.org/W2087064593","https://openalex.org/W2108235229","https://openalex.org/W2109090520","https://openalex.org/W2124934062","https://openalex.org/W2129713651","https://openalex.org/W2136145671","https://openalex.org/W2151197491","https://openalex.org/W2151693816","https://openalex.org/W2414887269","https://openalex.org/W4236236547","https://openalex.org/W6629401753","https://openalex.org/W6678416256"],"related_works":["https://openalex.org/W2375480909","https://openalex.org/W2353314428","https://openalex.org/W2385118824","https://openalex.org/W2012019886","https://openalex.org/W2359476137","https://openalex.org/W2166090428","https://openalex.org/W2362165903","https://openalex.org/W2381021552","https://openalex.org/W2354749003","https://openalex.org/W2377121353"],"abstract_inverted_index":{"We":[0,91],"investigate":[1],"the":[2,22,61,83,100,105,119],"use":[3],"of":[4,14,16,75,87],"time-frequency":[5],"(TF)":[6],"methods":[7,96],"to":[8,29,64,118],"query":[9],"biological":[10],"sequences":[11],"in":[12,32,60,67,82,99,109],"search":[13],"regions":[15],"similarity":[17],"or":[18,85],"critical":[19],"relationships":[20],"among":[21],"sequences.":[23],"Existing":[24],"querying":[25,43],"approaches":[26],"are":[27],"insensitive":[28],"repeats,":[30],"especially":[31],"low-complexity":[33],"regions,":[34],"and":[35,47,57,124],"do":[36],"not":[37],"provide":[38],"much":[39],"support":[40],"for":[41,130],"efficiently":[42],"sub-sequences":[44],"with":[45,132],"inserts":[46],"deletes":[48],"(or":[49],"gaps).":[50],"Our":[51],"approach":[52],"uses":[53],"highly-localized":[54],"basis":[55],"functions":[56],"multiple":[58],"transformations":[59,98],"TF":[62,101],"plane":[63,102],"map":[65],"characters":[66],"a":[68,76,125],"sequence":[69,84],"as":[70,72,79],"well":[71],"different":[73],"properties":[74],"sub-sequence,":[77],"such":[78],"its":[80],"position":[81],"number":[86],"gaps":[88],"between":[89],"sub-sequences.":[90],"analyze":[92],"gapped":[93],"query-based":[94],"alignment":[95,122],"using":[97],"while":[103],"demonstrating":[104],"method's":[106],"possible":[107],"operation":[108],"real-time":[110],"without":[111],"pre-processing.":[112],"The":[113],"algorithm's":[114],"performance":[115],"is":[116,128],"compared":[117],"widely-accepted":[120],"BLAST":[121],"approach,":[123],"significance":[126],"improvement":[127],"observed":[129],"queries":[131],"repetitive":[133],"segments.":[134]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":5}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
