{"id":"https://openalex.org/W2166344872","doi":"https://doi.org/10.1109/icassp.2010.5495665","title":"An information retrieval perspective on visualization of gene expression data with ontological annotation","display_name":"An information retrieval perspective on visualization of gene expression data with ontological annotation","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2166344872","doi":"https://doi.org/10.1109/icassp.2010.5495665","mag":"2166344872"},"language":"en","primary_location":{"id":"doi:10.1109/icassp.2010.5495665","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp.2010.5495665","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Acoustics, Speech and Signal Processing","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059446980","display_name":"Jaakko Peltonen","orcid":"https://orcid.org/0000-0003-3485-8585"},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jaakko Peltonen","raw_affiliation_strings":["Department of Information and Computer Science, Helsinki University of Technology, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information and Computer Science, Helsinki University of Technology, Finland","institution_ids":["https://openalex.org/I32943570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065532278","display_name":"Helena Aidos","orcid":"https://orcid.org/0000-0001-6827-4217"},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Helena Aidos","raw_affiliation_strings":["Department of Information and Computer Science, Helsinki University of Technology, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information and Computer Science, Helsinki University of Technology, Finland","institution_ids":["https://openalex.org/I32943570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066335313","display_name":"Nils Gehlenborg","orcid":"https://orcid.org/0000-0003-0327-8297"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nils Gehlenborg","raw_affiliation_strings":["European Bioinformatics Institute, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081419327","display_name":"Alvis Br\u0101zma","orcid":"https://orcid.org/0000-0001-5988-7409"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alvis Brazma","raw_affiliation_strings":["European Bioinformatics Institute, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018305257","display_name":"Samuel Kaski","orcid":"https://orcid.org/0000-0003-1925-9154"},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Samuel Kaski","raw_affiliation_strings":["Department of Information and Computer Science, Helsinki University of Technology, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information and Computer Science, Helsinki University of Technology, Finland","institution_ids":["https://openalex.org/I32943570"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"2178","last_page":"2181"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7602647542953491},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7594507336616516},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.692773699760437},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6461549997329712},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.621590256690979},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5835832357406616},{"id":"https://openalex.org/keywords/information-visualization","display_name":"Information visualization","score":0.5289697051048279},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.5168648362159729},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4895840585231781},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.43246573209762573},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.4288439154624939},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4171625077724457},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38613802194595337},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.251900851726532},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16333812475204468},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12135827541351318},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07885488867759705}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7602647542953491},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7594507336616516},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.692773699760437},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6461549997329712},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.621590256690979},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5835832357406616},{"id":"https://openalex.org/C185578843","wikidata":"https://www.wikidata.org/wiki/Q10609775","display_name":"Information visualization","level":3,"score":0.5289697051048279},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.5168648362159729},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4895840585231781},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.43246573209762573},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.4288439154624939},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4171625077724457},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38613802194595337},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.251900851726532},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16333812475204468},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12135827541351318},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07885488867759705},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icassp.2010.5495665","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp.2010.5495665","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Acoustics, Speech and Signal Processing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1545525598","https://openalex.org/W1564398635","https://openalex.org/W2087726300","https://openalex.org/W2100437550","https://openalex.org/W2139871091","https://openalex.org/W2146264532","https://openalex.org/W2150926065","https://openalex.org/W2164683872","https://openalex.org/W4235569188","https://openalex.org/W6634118655"],"related_works":["https://openalex.org/W3010975807","https://openalex.org/W2027333138","https://openalex.org/W3185027765","https://openalex.org/W2096373083","https://openalex.org/W2105200106","https://openalex.org/W2151530263","https://openalex.org/W1574055964","https://openalex.org/W2104025928","https://openalex.org/W2295030662","https://openalex.org/W3009051979"],"abstract_inverted_index":{"High-dimensional":[0],"data":[1,32,40,70],"are":[2,11],"often":[3],"visualized":[4],"by":[5,74],"dimensionality":[6],"reduction":[7],"methods":[8],"whose":[9],"goals":[10],"not":[12,72],"directly":[13],"related":[14],"to":[15,31,62],"visualization.":[16],"We":[17,48],"use":[18],"a":[19],"recent":[20],"formalization":[21],"of":[22,69],"visualization":[23,56],"as":[24],"information":[25,54],"retrieval":[26,59],"and":[27,66],"apply":[28],"that":[29,50],"formalism":[30],"with":[33,41,60],"structured":[34],"annotations:":[35],"we":[36],"analyze":[37],"gene":[38],"expression":[39],"annotations":[42],"from":[43],"the":[44,52,75],"Gene":[45],"Ontology":[46],"(GO).":[47],"show":[49],"using":[51],"GO":[53],"in":[55],"yields":[57],"better":[58],"respect":[61],"known":[63],"ontological":[64],"relationships":[65],"allows":[67],"discovery":[68],"properties":[71],"explained":[73],"ontology.":[76]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
