{"id":"https://openalex.org/W2101224071","doi":"https://doi.org/10.1109/icassp.2008.4517694","title":"Stochastic simulation of coupled chemical reactions using recursive methods","display_name":"Stochastic simulation of coupled chemical reactions using recursive methods","publication_year":2008,"publication_date":"2008-03-01","ids":{"openalex":"https://openalex.org/W2101224071","doi":"https://doi.org/10.1109/icassp.2008.4517694","mag":"2101224071"},"language":"en","primary_location":{"id":"doi:10.1109/icassp.2008.4517694","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp.2008.4517694","pdf_url":null,"source":{"id":"https://openalex.org/S4210167542","display_name":"Proceedings of the ... IEEE International Conference on Acoustics, Speech, and Signal Processing","issn_l":"1520-6149","issn":["1520-6149","2379-190X"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 IEEE International Conference on Acoustics, Speech and Signal Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/1269597","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016880244","display_name":"Vibha Mane","orcid":"https://orcid.org/0000-0001-9071-7715"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vibha Mane","raw_affiliation_strings":["Department of Electrical and Computer Engine, Stony Brook University, Stony Brook, NY, USA","Dept. of Electr. & Comput. Eng., Stony Brook Univ., Stony Brook, NY#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engine, Stony Brook University, Stony Brook, NY, USA","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., Stony Brook Univ., Stony Brook, NY#TAB#","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058778434","display_name":"M\u00f3nica F. Bugallo","orcid":"https://orcid.org/0000-0003-2963-1474"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Monica F. Bugallo","raw_affiliation_strings":["Department of Electrical and Computer Engine, Stony Brook University, Stony Brook, NY, USA","Dept. of Electr. & Comput. Eng., Stony Brook Univ., Stony Brook, NY#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engine, Stony Brook University, Stony Brook, NY, USA","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., Stony Brook Univ., Stony Brook, NY#TAB#","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006962534","display_name":"Petar M. Djuri\u0107","orcid":"https://orcid.org/0000-0001-7791-3199"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Petar M. Djuric","raw_affiliation_strings":["Department of Electrical and Computer Engine, Stony Brook University, Stony Brook, NY, USA","Dept. of Electr. & Comput. Eng., Stony Brook Univ., Stony Brook, NY#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engine, Stony Brook University, Stony Brook, NY, USA","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., Stony Brook Univ., Stony Brook, NY#TAB#","institution_ids":["https://openalex.org/I59553526"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5016880244"],"corresponding_institution_ids":["https://openalex.org/I59553526"],"apc_list":null,"apc_paid":null,"fwci":0.9441,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.7359736,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"126","issue":null,"first_page":"653","last_page":"656"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13052","display_name":"Molecular Communication and Nanonetworks","score":0.9699000120162964,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9513999819755554,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/monte-carlo-method","display_name":"Monte Carlo method","score":0.8077029585838318},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6382372379302979},{"id":"https://openalex.org/keywords/stochastic-simulation","display_name":"Stochastic simulation","score":0.6323009729385376},{"id":"https://openalex.org/keywords/stochastic-process","display_name":"Stochastic process","score":0.519878625869751},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.467435747385025},{"id":"https://openalex.org/keywords/method-of-moments","display_name":"Method of moments (probability theory)","score":0.4476913809776306},{"id":"https://openalex.org/keywords/applied-mathematics","display_name":"Applied mathematics","score":0.39792564511299133},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3594721853733063},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.33044207096099854},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22419047355651855},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.0942663848400116},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08652615547180176}],"concepts":[{"id":"https://openalex.org/C19499675","wikidata":"https://www.wikidata.org/wiki/Q232207","display_name":"Monte Carlo method","level":2,"score":0.8077029585838318},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6382372379302979},{"id":"https://openalex.org/C25915931","wikidata":"https://www.wikidata.org/wiki/Q4180825","display_name":"Stochastic simulation","level":2,"score":0.6323009729385376},{"id":"https://openalex.org/C8272713","wikidata":"https://www.wikidata.org/wiki/Q176737","display_name":"Stochastic process","level":2,"score":0.519878625869751},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.467435747385025},{"id":"https://openalex.org/C2780033567","wikidata":"https://www.wikidata.org/wiki/Q6823720","display_name":"Method of moments (probability theory)","level":3,"score":0.4476913809776306},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.39792564511299133},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3594721853733063},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.33044207096099854},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22419047355651855},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0942663848400116},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08652615547180176},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/icassp.2008.4517694","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp.2008.4517694","pdf_url":null,"source":{"id":"https://openalex.org/S4210167542","display_name":"Proceedings of the ... IEEE International Conference on Acoustics, Speech, and Signal Processing","issn_l":"1520-6149","issn":["1520-6149","2379-190X"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 IEEE International Conference on Acoustics, Speech and Signal Processing","raw_type":"proceedings-article"},{"id":"pmh:oai:zenodo.org:1269597","is_oa":true,"landing_page_url":"https://zenodo.org/record/1269597","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:1269597","is_oa":true,"landing_page_url":"https://zenodo.org/record/1269597","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W195372256","https://openalex.org/W1598648881","https://openalex.org/W1978319180","https://openalex.org/W1989817320","https://openalex.org/W1999207383","https://openalex.org/W2040431865","https://openalex.org/W2042321087","https://openalex.org/W2056393594","https://openalex.org/W2059719532","https://openalex.org/W2078119846","https://openalex.org/W2078734278","https://openalex.org/W2084924279","https://openalex.org/W2085384538","https://openalex.org/W3143760913"],"related_works":["https://openalex.org/W2005266888","https://openalex.org/W2353987430","https://openalex.org/W1985063657","https://openalex.org/W2016787741","https://openalex.org/W2072840425","https://openalex.org/W2149407580","https://openalex.org/W2116778801","https://openalex.org/W2327666013","https://openalex.org/W2030551718","https://openalex.org/W810885486"],"abstract_inverted_index":{"In":[0,15],"this":[1,16],"paper,":[2],"we":[3,18],"present":[4],"a":[5],"new":[6],"method":[7,17],"for":[8,22,67],"stochastic":[9],"simulation":[10,38],"of":[11,28,55,70],"coupled":[12,71],"chemical":[13],"reactions.":[14,73],"obtain":[19],"recursive":[20],"expressions":[21],"propagating":[23],"the":[24,29],"first":[25],"two":[26],"moments":[27],"probability":[30],"distributions":[31],"over":[32,36],"time.":[33],"Its":[34],"advantage":[35],"other":[37],"methods":[39],"is":[40],"that":[41],"it":[42,51],"does":[43],"not":[44],"require":[45],"Monte":[46,60],"Carlo":[47,61],"simulations,":[48],"and":[49],"hence":[50],"performs":[52],"several":[53],"orders":[54],"magnitude":[56],"faster":[57],"than":[58],"existing":[59],"methods.":[62],"Simulation":[63],"results":[64],"are":[65],"presented":[66],"some":[68],"examples":[69],"first-order":[72]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}