{"id":"https://openalex.org/W2026293468","doi":"https://doi.org/10.1109/icassp.2008.4517693","title":"A stochastic approach to solving inverse problems of biochemical networks","display_name":"A stochastic approach to solving inverse problems of biochemical networks","publication_year":2008,"publication_date":"2008-03-01","ids":{"openalex":"https://openalex.org/W2026293468","doi":"https://doi.org/10.1109/icassp.2008.4517693","mag":"2026293468"},"language":"en","primary_location":{"id":"doi:10.1109/icassp.2008.4517693","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp.2008.4517693","pdf_url":null,"source":{"id":"https://openalex.org/S4210167542","display_name":"Proceedings of the ... IEEE International Conference on Acoustics, Speech, and Signal Processing","issn_l":"1520-6149","issn":["1520-6149","2379-190X"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 IEEE International Conference on Acoustics, Speech and Signal Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058778434","display_name":"M\u00f3nica F. Bugallo","orcid":"https://orcid.org/0000-0003-2963-1474"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Monica F. Bugallo","raw_affiliation_strings":["Department of Electrical & Computer Engineering, Stony Brook University, Stony Brook, NY, USA","Dept. of Electr. & Comput. Eng., Stony Brook Univ., Stony Brook, NY#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Electrical & Computer Engineering, Stony Brook University, Stony Brook, NY, USA","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., Stony Brook Univ., Stony Brook, NY#TAB#","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006962534","display_name":"Petar M. Djuri\u0107","orcid":"https://orcid.org/0000-0001-7791-3199"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Petar M. Djuric","raw_affiliation_strings":["Department of Electrical & Computer Engineering, Stony Brook University, Stony Brook, NY, USA","Dept. of Electr. & Comput. Eng., Stony Brook Univ., Stony Brook, NY#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Electrical & Computer Engineering, Stony Brook University, Stony Brook, NY, USA","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., Stony Brook Univ., Stony Brook, NY#TAB#","institution_ids":["https://openalex.org/I59553526"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5058778434"],"corresponding_institution_ids":["https://openalex.org/I59553526"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.23825503,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"295","issue":null,"first_page":"649","last_page":"652"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7242105603218079},{"id":"https://openalex.org/keywords/inverse-problem","display_name":"Inverse problem","score":0.5620999932289124},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5570079684257507},{"id":"https://openalex.org/keywords/inverse","display_name":"Inverse","score":0.5013492107391357},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.4894324839115143},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.47380322217941284},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.46513503789901733},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.4491437077522278},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.36979591846466064},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3649333715438843},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3360556662082672},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2083365023136139}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7242105603218079},{"id":"https://openalex.org/C135252773","wikidata":"https://www.wikidata.org/wiki/Q1567213","display_name":"Inverse problem","level":2,"score":0.5620999932289124},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5570079684257507},{"id":"https://openalex.org/C207467116","wikidata":"https://www.wikidata.org/wiki/Q4385666","display_name":"Inverse","level":2,"score":0.5013492107391357},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.4894324839115143},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.47380322217941284},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.46513503789901733},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.4491437077522278},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.36979591846466064},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3649333715438843},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3360556662082672},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2083365023136139},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icassp.2008.4517693","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp.2008.4517693","pdf_url":null,"source":{"id":"https://openalex.org/S4210167542","display_name":"Proceedings of the ... IEEE International Conference on Acoustics, Speech, and Signal Processing","issn_l":"1520-6149","issn":["1520-6149","2379-190X"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 IEEE International Conference on Acoustics, Speech and Signal Processing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Responsible consumption and production","score":0.5199999809265137,"id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1500551892","https://openalex.org/W1602168290","https://openalex.org/W1974272479","https://openalex.org/W1978486653","https://openalex.org/W1979969656","https://openalex.org/W1987129107","https://openalex.org/W2104130465","https://openalex.org/W2140484213","https://openalex.org/W2155418451","https://openalex.org/W3143760913","https://openalex.org/W4210338713"],"related_works":["https://openalex.org/W1585007175","https://openalex.org/W2382521049","https://openalex.org/W2144385241","https://openalex.org/W4300101996","https://openalex.org/W2165950148","https://openalex.org/W4253593777","https://openalex.org/W2951497643","https://openalex.org/W4403053866","https://openalex.org/W2331917905","https://openalex.org/W3155039083"],"abstract_inverted_index":{"Advances":[0],"in":[1,86],"the":[2,32,67,74,90],"development":[3],"of":[4,25,42,51,70,97],"models":[5,47,53],"that":[6,35],"can":[7],"satisfactorily":[8],"describe":[9],"biochemical":[10,71],"networks":[11,72],"are":[12,84,92],"extremely":[13],"valuable":[14],"for":[15,65],"understanding":[16],"life":[17],"processes.":[18],"In":[19,57],"order":[20],"to":[21,30,100],"get":[22],"full":[23],"description":[24],"such":[26],"networks,":[27],"one":[28],"has":[29],"solve":[31],"inverse":[33,68],"problem,":[34],"is,":[36],"estimate":[37],"unknowns":[38],"(rates":[39],"and":[40,89,94],"populations":[41],"various":[43],"species)":[44],"or":[45],"choose":[46],"from":[48],"a":[49],"set":[50],"hypothesized":[52],"using":[54,73],"experimental":[55],"data.":[56],"this":[58],"paper":[59],"we":[60],"discuss":[61],"signal":[62],"processing":[63],"techniques":[64],"resolving":[66],"problem":[69],"stochastic":[75],"approach":[76],"based":[77],"on":[78],"Bayesian":[79],"theory.":[80],"The":[81],"proposed":[82],"methods":[83,99],"tested":[85],"simple":[87],"scenarios":[88],"results":[91],"promising":[93],"suggest":[95],"application":[96],"these":[98],"more":[101],"complex":[102],"networks.":[103]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
