{"id":"https://openalex.org/W2139881468","doi":"https://doi.org/10.1109/icassp.2006.1660521","title":"Inference of Biologically Relevant Gene Influence Networks Using the Directed Information Criterion","display_name":"Inference of Biologically Relevant Gene Influence Networks Using the Directed Information Criterion","publication_year":2006,"publication_date":"2006-08-02","ids":{"openalex":"https://openalex.org/W2139881468","doi":"https://doi.org/10.1109/icassp.2006.1660521","mag":"2139881468"},"language":"en","primary_location":{"id":"doi:10.1109/icassp.2006.1660521","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp.2006.1660521","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2006 IEEE International Conference on Acoustics Speed and Signal Processing Proceedings","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101966233","display_name":"Arvind Rao","orcid":"https://orcid.org/0000-0001-6115-2321"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Arvind Rao","raw_affiliation_strings":["Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, MI, USA"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077692655","display_name":"Alfred O. Hero","orcid":"https://orcid.org/0000-0002-2531-9670"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A.O. Hero","raw_affiliation_strings":["Departments of Statistics, University of Michigan, Ann Arbor, MI, USA","3Cell and Developmental Biology"],"affiliations":[{"raw_affiliation_string":"Departments of Statistics, University of Michigan, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"3Cell and Developmental Biology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111548295","display_name":"David J. States","orcid":null},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D.J. States","raw_affiliation_strings":["(University of Michigan)"],"affiliations":[{"raw_affiliation_string":"(University of Michigan)","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024115870","display_name":"James Douglas Engel","orcid":"https://orcid.org/0000-0001-9593-1825"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J.D. Engel","raw_affiliation_strings":["Cell and Developmental Biology, University of Michigan, Ann Arbor, MI, USA","Samuel and Jean Frankel Cardiovascular Center"],"affiliations":[{"raw_affiliation_string":"Cell and Developmental Biology, University of Michigan, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Samuel and Jean Frankel Cardiovascular Center","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101966233"],"corresponding_institution_ids":["https://openalex.org/I27837315"],"apc_list":null,"apc_paid":null,"fwci":1.6345,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.82456382,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"2","issue":null,"first_page":"II","last_page":"1028"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.8242253065109253},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6935473680496216},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6354615092277527},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.6286868453025818},{"id":"https://openalex.org/keywords/verifiable-secret-sharing","display_name":"Verifiable secret sharing","score":0.47169068455696106},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4315764904022217},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4274996519088745},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42418602108955383},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3831953704357147},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19251486659049988},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18676435947418213},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09264063835144043}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.8242253065109253},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6935473680496216},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6354615092277527},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.6286868453025818},{"id":"https://openalex.org/C85847156","wikidata":"https://www.wikidata.org/wiki/Q59015987","display_name":"Verifiable secret sharing","level":3,"score":0.47169068455696106},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4315764904022217},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4274996519088745},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42418602108955383},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3831953704357147},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19251486659049988},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18676435947418213},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09264063835144043},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/icassp.2006.1660521","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp.2006.1660521","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2006 IEEE International Conference on Acoustics Speed and Signal Processing Proceedings","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.126.9728","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.126.9728","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.eecs.umich.edu/~hero/Preprints/dti_reg_nets12.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W72967156","https://openalex.org/W2004232360","https://openalex.org/W2012804055","https://openalex.org/W2044646840","https://openalex.org/W2073307618","https://openalex.org/W2117994680","https://openalex.org/W2140911775","https://openalex.org/W2727300868","https://openalex.org/W4230524569","https://openalex.org/W6740523754"],"related_works":["https://openalex.org/W2560421304","https://openalex.org/W2950199998","https://openalex.org/W2951387065","https://openalex.org/W2134575910","https://openalex.org/W4385727351","https://openalex.org/W4306798985","https://openalex.org/W2156421048","https://openalex.org/W2135896045","https://openalex.org/W2884256268","https://openalex.org/W2171763327"],"abstract_inverted_index":{"The":[0],"systematic":[1],"inference":[2,56],"of":[3,19,34,40,43,68,96],"biologically":[4],"relevant":[5],"influence":[6],"networks":[7],"remains":[8],"a":[9,53,82],"challenging":[10],"problem":[11],"in":[12],"computational":[13],"biology.":[14],"Even":[15],"though":[16],"the":[17,31,41,44,60,66,71,94,97],"availability":[18],"high-throughput":[20],"data":[21],"has":[22],"enabled":[23],"us":[24],"to":[25,29,75,89],"use":[26,81],"probabilistic":[27,54],"models":[28],"infer":[30],"plausible":[32],"structure":[33],"such":[35],"networks,":[36],"their":[37],"true":[38],"interpretation":[39],"biology":[42,67],"process":[45],"is":[46],"questionable.":[47],"In":[48],"this":[49],"work,":[50],"we":[51],"propose":[52],"network":[55],"methodology,":[57],"based":[58],"on":[59,93],"Directed":[61],"information":[62],"criterion,":[63],"which":[64],"incorporates":[65],"transcription":[69],"within":[70],"framework,":[72],"so":[73],"as":[74],"enable":[76],"experimentally":[77],"verifiable":[78],"inference.":[79],"We":[80],"publicly":[83],"available":[84],"embryonic":[85],"kidney":[86],"microarray":[87],"dataset":[88],"demonstrate":[90],"our":[91],"results":[92],"regulation":[95],"Gata2/Gata3":[98],"genes.":[99]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
