{"id":"https://openalex.org/W2140751590","doi":"https://doi.org/10.1109/icarcv.2004.1468990","title":"\"Copasetic analysis\": automated analysis of biological gene expression images","display_name":"\"Copasetic analysis\": automated analysis of biological gene expression images","publication_year":2005,"publication_date":"2005-07-27","ids":{"openalex":"https://openalex.org/W2140751590","doi":"https://doi.org/10.1109/icarcv.2004.1468990","mag":"2140751590"},"language":"en","primary_location":{"id":"doi:10.1109/icarcv.2004.1468990","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icarcv.2004.1468990","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ICARCV 2004 8th Control, Automation, Robotics and Vision Conference, 2004.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://bura.brunel.ac.uk/bitstream/2438/4743/1/Fulltext.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081578292","display_name":"Karl Fraser","orcid":"https://orcid.org/0000-0002-1136-4024"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"K. Fraser","raw_affiliation_strings":["DISC, Brunel University, Uxbridge, UK","DISC, Brunel University, Uxbridge, UK#TAB#"],"affiliations":[{"raw_affiliation_string":"DISC, Brunel University, Uxbridge, UK","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"DISC, Brunel University, Uxbridge, UK#TAB#","institution_ids":["https://openalex.org/I59433898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111242259","display_name":"Philipp S O\u2019Neill","orcid":"https://orcid.org/0009-0001-9208-7304"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"P. O'Neill","raw_affiliation_strings":["DISC, Brunel University, Uxbridge, UK","DISC, Brunel University, Uxbridge, UK#TAB#"],"affiliations":[{"raw_affiliation_string":"DISC, Brunel University, Uxbridge, UK","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"DISC, Brunel University, Uxbridge, UK#TAB#","institution_ids":["https://openalex.org/I59433898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100699858","display_name":"Zidong Wang","orcid":"https://orcid.org/0000-0002-9576-7401"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Zidong Wang","raw_affiliation_strings":["DISC, Brunel University, Uxbridge, UK","DISC, Brunel University, Uxbridge, UK#TAB#"],"affiliations":[{"raw_affiliation_string":"DISC, Brunel University, Uxbridge, UK","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"DISC, Brunel University, Uxbridge, UK#TAB#","institution_ids":["https://openalex.org/I59433898"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100375376","display_name":"Xiaohui Liu","orcid":"https://orcid.org/0000-0003-1589-1267"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Xiaohui Liu","raw_affiliation_strings":["DISC, Brunel University, Uxbridge, UK","DISC, Brunel University, Uxbridge, UK#TAB#"],"affiliations":[{"raw_affiliation_string":"DISC, Brunel University, Uxbridge, UK","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"DISC, Brunel University, Uxbridge, UK#TAB#","institution_ids":["https://openalex.org/I59433898"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5081578292"],"corresponding_institution_ids":["https://openalex.org/I59433898"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.1146483,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2","issue":null,"first_page":"1061","last_page":"1066"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6585023999214172},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.6235756874084473},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.583991289138794},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5685274004936218},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5618516206741333},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.4553343653678894},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4455149173736572},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42042088508605957},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3822641968727112},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3551980257034302},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3070361614227295},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.23365530371665955},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18124285340309143},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1210368275642395},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09191527962684631}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6585023999214172},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.6235756874084473},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.583991289138794},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5685274004936218},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5618516206741333},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.4553343653678894},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4455149173736572},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42042088508605957},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3822641968727112},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3551980257034302},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3070361614227295},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.23365530371665955},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18124285340309143},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1210368275642395},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09191527962684631},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/icarcv.2004.1468990","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icarcv.2004.1468990","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ICARCV 2004 8th Control, Automation, Robotics and Vision Conference, 2004.","raw_type":"proceedings-article"},{"id":"pmh:oai:bura.brunel.ac.uk:2438/4743","is_oa":true,"landing_page_url":"http://bura.brunel.ac.uk/handle/2438/4743","pdf_url":"http://bura.brunel.ac.uk/bitstream/2438/4743/1/Fulltext.pdf","source":{"id":"https://openalex.org/S4306401473","display_name":"Brunel University Research Archive (BURA) (Brunel University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59433898","host_organization_name":"Brunel University of London","host_organization_lineage":["https://openalex.org/I59433898"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":{"id":"pmh:oai:bura.brunel.ac.uk:2438/4743","is_oa":true,"landing_page_url":"http://bura.brunel.ac.uk/handle/2438/4743","pdf_url":"http://bura.brunel.ac.uk/bitstream/2438/4743/1/Fulltext.pdf","source":{"id":"https://openalex.org/S4306401473","display_name":"Brunel University Research Archive (BURA) (Brunel University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59433898","host_organization_name":"Brunel University of London","host_organization_lineage":["https://openalex.org/I59433898"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"},"sustainable_development_goals":[{"score":0.5,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320286","display_name":"University College London","ror":"https://ror.org/02jx3x895"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140751590.pdf"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1570335843","https://openalex.org/W1600276254","https://openalex.org/W1693940118","https://openalex.org/W1990368529","https://openalex.org/W2001074584","https://openalex.org/W2076204760","https://openalex.org/W2107063023","https://openalex.org/W2112356466","https://openalex.org/W2119765017","https://openalex.org/W2127218421","https://openalex.org/W2150926065","https://openalex.org/W2163646206","https://openalex.org/W4231372369","https://openalex.org/W6635900570","https://openalex.org/W6637250627"],"related_works":["https://openalex.org/W2120447654","https://openalex.org/W2977179488","https://openalex.org/W2144453115","https://openalex.org/W2128223750","https://openalex.org/W4238532390","https://openalex.org/W2188872161","https://openalex.org/W2002978035","https://openalex.org/W2961779879","https://openalex.org/W1969895229","https://openalex.org/W2108497208"],"abstract_inverted_index":{"In":[0],"the":[1,9,12,27,33,38,75,108],"past":[2],"decade":[3],"computational":[4],"biology":[5],"has":[6,44],"come":[7],"to":[8,47],"forefront":[10],"of":[11,23,30,40,54,60,96],"public's":[13],"perception":[14],"with":[15,112],"advancements":[16],"in":[17],"domain":[18],"knowledge":[19],"and":[20,37],"a":[21,57,79,90,116],"variety":[22],"analysis":[24,76],"techniques.":[25],"With":[26],"recent":[28],"completion":[29],"projects":[31],"like":[32],"human":[34,85],"genome":[35],"sequence,":[36],"development":[39],"microarray":[41],"chips":[42],"it":[43],"become":[45],"possible":[46],"simultaneously":[48],"analyse":[49],"expression":[50],"levels":[51],"for":[52,67],"thousands":[53],"genes.":[55],"Typically,":[56],"slide":[58],"surface":[59],"less":[61],"than":[62],"24":[63],"cm/sup":[64],"2/,":[65],"receptors":[66],"30,000":[68],"genes":[69],"can":[70],"be":[71],"printed,":[72],"but":[73],"currently":[74],"process":[77],"is":[78,100],"time":[80],"consuming":[81],"semi-autonomous":[82],"step":[83],"requiring":[84],"guidance.":[86],"The":[87],"paper":[88],"proposes":[89],"framework,":[91],"which":[92,106,114],"facilitates":[93],"automated":[94],"processing":[95],"these":[97],"images.":[98],"This":[99],"supported":[101],"by":[102],"real":[103],"world":[104],"examples,":[105],"demonstrate":[107],"technique's":[109],"capabilities":[110],"along":[111],"results,":[113],"show":[115],"marked":[117],"improvement":[118],"over":[119],"existing":[120],"implementations.":[121]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
