{"id":"https://openalex.org/W2010398381","doi":"https://doi.org/10.1109/icadiwt.2014.6814662","title":"Bwasw-Cloud: Efficient sequence alignment algorithm for two big data with MapReduce","display_name":"Bwasw-Cloud: Efficient sequence alignment algorithm for two big data with MapReduce","publication_year":2014,"publication_date":"2014-02-01","ids":{"openalex":"https://openalex.org/W2010398381","doi":"https://doi.org/10.1109/icadiwt.2014.6814662","mag":"2010398381"},"language":"en","primary_location":{"id":"doi:10.1109/icadiwt.2014.6814662","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icadiwt.2014.6814662","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Fifth International Conference on the Applications of Digital Information and Web Technologies (ICADIWT 2014)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103150619","display_name":"Mingming Sun","orcid":"https://orcid.org/0000-0002-6199-4905"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Mingming Sun","raw_affiliation_strings":["Computer Science University of Science and Technology of China, Hefei, China","Computer Science, University of Science and Technology of China, Hefei, China"],"affiliations":[{"raw_affiliation_string":"Computer Science University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Computer Science, University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077322091","display_name":"Xuehai Zhou","orcid":"https://orcid.org/0000-0002-8360-3143"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuehai Zhou","raw_affiliation_strings":["Computer Science University of Science and Technology of China, Hefei, China","Computer Science, University of Science and Technology of China, Hefei, China"],"affiliations":[{"raw_affiliation_string":"Computer Science University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Computer Science, University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068913551","display_name":"Feng Yang","orcid":"https://orcid.org/0000-0003-0364-5480"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feng Yang","raw_affiliation_strings":["Computer Science University of Science and Technology of China, Hefei, China","Computer Science, University of Science and Technology of China, Hefei, China"],"affiliations":[{"raw_affiliation_string":"Computer Science University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Computer Science, University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086002484","display_name":"Kun Lu","orcid":"https://orcid.org/0000-0003-1370-8633"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kun Lu","raw_affiliation_strings":["Computer Science University of Science and Technology of China, Hefei, China","Computer Science, University of Science and Technology of China, Hefei, China"],"affiliations":[{"raw_affiliation_string":"Computer Science University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Computer Science, University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012002926","display_name":"Dong Dai","orcid":"https://orcid.org/0000-0003-4078-8149"},"institutions":[{"id":"https://openalex.org/I12315562","display_name":"Texas Tech University","ror":"https://ror.org/0405mnx93","country_code":"US","type":"education","lineage":["https://openalex.org/I12315562"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dong Dai","raw_affiliation_strings":["Computer Science Texas Tech Univiersity, Lubbock, Texas","Computer Science, Texas Tech Univiersity, Lubbock, Texas"],"affiliations":[{"raw_affiliation_string":"Computer Science Texas Tech Univiersity, Lubbock, Texas","institution_ids":["https://openalex.org/I12315562"]},{"raw_affiliation_string":"Computer Science, Texas Tech Univiersity, Lubbock, Texas","institution_ids":["https://openalex.org/I12315562"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5103150619"],"corresponding_institution_ids":["https://openalex.org/I126520041"],"apc_list":null,"apc_paid":null,"fwci":0.5577,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.65732651,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"213","last_page":"218"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8253812789916992},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7628791332244873},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.7036787271499634},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6637783646583557},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.46067485213279724},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4506344199180603},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4459350109100342},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.4236578047275543},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3915640711784363}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8253812789916992},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7628791332244873},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.7036787271499634},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6637783646583557},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.46067485213279724},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4506344199180603},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4459350109100342},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.4236578047275543},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3915640711784363},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icadiwt.2014.6814662","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icadiwt.2014.6814662","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Fifth International Conference on the Applications of Digital Information and Web Technologies (ICADIWT 2014)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1990073900","https://openalex.org/W2017928178","https://openalex.org/W2046626049","https://openalex.org/W2108235229","https://openalex.org/W2114296561","https://openalex.org/W2120641102","https://openalex.org/W2121762798","https://openalex.org/W2136145671","https://openalex.org/W2142619120","https://openalex.org/W2173213060","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W1486249959","https://openalex.org/W2885386129","https://openalex.org/W2051969447","https://openalex.org/W2948014085","https://openalex.org/W2141530749","https://openalex.org/W2004215917","https://openalex.org/W2468116983","https://openalex.org/W2103737249","https://openalex.org/W1974956921","https://openalex.org/W2111937814"],"abstract_inverted_index":{"The":[0,21,107],"recent":[1],"next-generation":[2],"sequencing":[3],"machines":[4],"generate":[5],"sequences":[6,23,39,43],"at":[7],"an":[8],"unprecedented":[9],"rate,":[10],"and":[11,99,114],"a":[12,45,68,82],"sequence":[13,49,71,84],"is":[14,91],"not":[15],"short":[16],"any":[17],"more":[18],"called":[19,74],"read.":[20],"reference":[22,42],"which":[24],"are":[25,29],"aligned":[26],"reads":[27,80],"against":[28,81],"also":[30],"increasingly":[31],"large.":[32],"Efficiently":[33],"mapping":[34],"large":[35,83],"number":[36],"of":[37,105],"long":[38,79],"with":[40],"big":[41,59,118],"poses":[44],"new":[46,69],"challenge":[47],"to":[48,55],"alignment.":[50],"Sequence":[51],"alignment":[52,72],"algorithms":[53],"become":[54],"match":[56,116],"on":[57],"two":[58,117],"data.":[60],"To":[61],"address":[62],"the":[63,87,94,101],"above":[64],"problem,":[65],"we":[66],"propose":[67],"parallel":[70],"algorithm":[73,98],"Bwasw-Cloud,":[75],"optimized":[76],"for":[77],"aligning":[78],"data":[85,119],"(e.g.":[86],"human":[88],"genome).":[89],"It":[90],"modeled":[92],"after":[93],"widely":[95],"used":[96],"BWA-SW":[97],"uses":[100],"open-source":[102],"Hadoop":[103],"implementation":[104],"MapReduce.":[106],"results":[108],"show":[109],"that":[110],"Bwasw-Cloud":[111],"can":[112],"effectively":[113],"quickly":[115],"in":[120],"common":[121],"cluster.":[122]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
