{"id":"https://openalex.org/W2052449915","doi":"https://doi.org/10.1109/icacci.2014.6968196","title":"A way for accelerating DNA sequences reconstruction problem based on CUDA","display_name":"A way for accelerating DNA sequences reconstruction problem based on CUDA","publication_year":2014,"publication_date":"2014-09-01","ids":{"openalex":"https://openalex.org/W2052449915","doi":"https://doi.org/10.1109/icacci.2014.6968196","mag":"2052449915"},"language":"en","primary_location":{"id":"doi:10.1109/icacci.2014.6968196","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icacci.2014.6968196","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 International Conference on Advances in Computing, Communications and Informatics (ICACCI)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068868822","display_name":"Yukun Zhong","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yukun Zhong","raw_affiliation_strings":["Computer Science and Engineering Department, Sichuan University, Penshan, China","Computer Science and Engineering Department Sichuan University Jinjiang College, Penshan 620860, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering Department, Sichuan University, Penshan, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Computer Science and Engineering Department Sichuan University Jinjiang College, Penshan 620860, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013330606","display_name":"JianBiao Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"JianBiao Lin","raw_affiliation_strings":["Computer Science and Engineering Department, Sichuan University, Penshan, China","Computer Science and Engineering Department Sichuan University Jinjiang College, Penshan 620860, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering Department, Sichuan University, Penshan, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Computer Science and Engineering Department Sichuan University Jinjiang College, Penshan 620860, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003263538","display_name":"BaoQiu Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"BaoQiu Wang","raw_affiliation_strings":["Computer Science and Engineering Department, Sichuan University, Penshan, China","Computer Science and Engineering Department Sichuan University Jinjiang College, Penshan 620860, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering Department, Sichuan University, Penshan, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Computer Science and Engineering Department Sichuan University Jinjiang College, Penshan 620860, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056396551","display_name":"Tao Chen","orcid":"https://orcid.org/0000-0002-2283-7413"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Tao","raw_affiliation_strings":["Computer Science and Engineering Department, Sichuan University, Penshan, China","Computer Science and Engineering Department Sichuan University Jinjiang College, Penshan 620860, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering Department, Sichuan University, Penshan, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Computer Science and Engineering Department Sichuan University Jinjiang College, Penshan 620860, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024508297","display_name":"Wen Xie","orcid":"https://orcid.org/0000-0002-3220-1072"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xie Wen","raw_affiliation_strings":["Computer Science and Engineering Department, Sichuan University, Penshan, China","Computer Science and Engineering Department Sichuan University Jinjiang College, Penshan 620860, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering Department, Sichuan University, Penshan, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Computer Science and Engineering Department Sichuan University Jinjiang College, Penshan 620860, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031747017","display_name":"Che Nian","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Che Nian","raw_affiliation_strings":["Computer Science and Engineering Department, Sichuan University, Penshan, China","Computer Science and Engineering Department Sichuan University Jinjiang College, Penshan 620860, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering Department, Sichuan University, Penshan, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Computer Science and Engineering Department Sichuan University Jinjiang College, Penshan 620860, China","institution_ids":["https://openalex.org/I24185976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I24185976"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"68","issue":null,"first_page":"151","last_page":"157"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12326","display_name":"Network Packet Processing and Optimization","score":0.9714999794960022,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suffix-array","display_name":"Suffix array","score":0.9010312557220459},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.8766424655914307},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7994213104248047},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.7620630264282227},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.7397236227989197},{"id":"https://openalex.org/keywords/multi-core-processor","display_name":"Multi-core processor","score":0.49705031514167786},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4639292359352112},{"id":"https://openalex.org/keywords/shotgun","display_name":"Shotgun","score":0.43386155366897583},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.41257938742637634},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.16062480211257935},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10644298791885376},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10541614890098572},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.09757271409034729},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.08636441826820374}],"concepts":[{"id":"https://openalex.org/C2779259728","wikidata":"https://www.wikidata.org/wiki/Q281472","display_name":"Suffix array","level":3,"score":0.9010312557220459},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.8766424655914307},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7994213104248047},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.7620630264282227},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.7397236227989197},{"id":"https://openalex.org/C78766204","wikidata":"https://www.wikidata.org/wiki/Q555032","display_name":"Multi-core processor","level":2,"score":0.49705031514167786},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4639292359352112},{"id":"https://openalex.org/C2781434637","wikidata":"https://www.wikidata.org/wiki/Q486396","display_name":"Shotgun","level":3,"score":0.43386155366897583},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.41257938742637634},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.16062480211257935},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10644298791885376},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10541614890098572},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.09757271409034729},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.08636441826820374},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icacci.2014.6968196","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icacci.2014.6968196","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 International Conference on Advances in Computing, Communications and Informatics (ICACCI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1675130169","https://openalex.org/W1984236772","https://openalex.org/W1992851788","https://openalex.org/W1995596660","https://openalex.org/W2024183012","https://openalex.org/W2067974452","https://openalex.org/W2118558147","https://openalex.org/W2125858132","https://openalex.org/W2166265186","https://openalex.org/W2398736067","https://openalex.org/W6678448540"],"related_works":["https://openalex.org/W1963859303","https://openalex.org/W2364044215","https://openalex.org/W2389600408","https://openalex.org/W240129890","https://openalex.org/W3048701459","https://openalex.org/W2149078538","https://openalex.org/W2370314112","https://openalex.org/W1912958759","https://openalex.org/W2792081825","https://openalex.org/W2893308117"],"abstract_inverted_index":{"Traditionally,":[0],"shotgun":[1,41],"for":[2],"DNA":[3,21,37],"sequences":[4],"alignment":[5],"is":[6,15,63,96],"one":[7],"of":[8,12,36,58,84,104],"the":[9,34,56,82,94],"main":[10],"method":[11,31,42,95],"bioinformatics.":[13],"It":[14],"used":[16],"to":[17,32],"break":[18],"a":[19,29],"long":[20],"sequence":[22,38],"into":[23],"small":[24],"fragments.":[25],"This":[26],"paper":[27],"introduces":[28],"new":[30],"improve":[33],"efficiency":[35,83],"reconstruction":[39],"after":[40],"using":[43,61],"construction":[44,57],"suffix":[45,59],"array":[46,60],"based":[47],"on":[48,68],"CUDA":[49],"programming":[50],"model.":[51],"The":[52,79],"experimental":[53],"results":[54],"show":[55],"GPU":[62,85],"an":[64],"more":[65,97],"efficient":[66],"approach":[67],"Intel(R)":[69],"Core(TM)":[70],"i3-3110K":[71],"quad-core":[72],"and":[73,91],"NVIDIA":[74],"GeForce":[75],"610M":[76],"GPU.":[77],"Consequently,":[78],"experiment":[80],"presents":[81],"performance":[86],"compared":[87],"with":[88],"CPU":[89,105],"performance,":[90],"study":[92],"shows":[93],"than":[98,102],"20":[99],"times":[100],"speedup":[101],"that":[103],"serial":[106],"implementation.":[107]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
