{"id":"https://openalex.org/W4406418087","doi":"https://doi.org/10.1109/ic3i61595.2024.10828643","title":"AI-driven Gene Expression Analysis on HPC Platforms: Challenges and Solutions","display_name":"AI-driven Gene Expression Analysis on HPC Platforms: Challenges and Solutions","publication_year":2024,"publication_date":"2024-09-18","ids":{"openalex":"https://openalex.org/W4406418087","doi":"https://doi.org/10.1109/ic3i61595.2024.10828643"},"language":"en","primary_location":{"id":"doi:10.1109/ic3i61595.2024.10828643","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ic3i61595.2024.10828643","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 7th International Conference on Contemporary Computing and Informatics (IC3I)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103280615","display_name":"V.S Anusuya Devi","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"V.S Anusuya Devi","raw_affiliation_strings":["New Horizon College of Engineering,Departmento of Applied Sciences,Bangalore,India"],"affiliations":[{"raw_affiliation_string":"New Horizon College of Engineering,Departmento of Applied Sciences,Bangalore,India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115894702","display_name":"N. Sreevani","orcid":null},"institutions":[{"id":"https://openalex.org/I138535024","display_name":"Aeronautical Development Agency","ror":"https://ror.org/016d6bq56","country_code":"IN","type":"government","lineage":["https://openalex.org/I138535024"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"N. Sreevani","raw_affiliation_strings":["Institute of Aeronautical Engineering,Department of CSE(Cyber Security),Dundigal,Hyderabad,India,500043"],"affiliations":[{"raw_affiliation_string":"Institute of Aeronautical Engineering,Department of CSE(Cyber Security),Dundigal,Hyderabad,India,500043","institution_ids":["https://openalex.org/I138535024"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030306450","display_name":"Amandeep Nagpal","orcid":null},"institutions":[{"id":"https://openalex.org/I110360157","display_name":"Lovely Professional University","ror":"https://ror.org/00et6q107","country_code":"IN","type":"education","lineage":["https://openalex.org/I110360157"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Amandeep Nagpal","raw_affiliation_strings":["Lovely Professional University,Phagwara,India"],"affiliations":[{"raw_affiliation_string":"Lovely Professional University,Phagwara,India","institution_ids":["https://openalex.org/I110360157"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Susmita Kalyani","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Susmita Kalyani","raw_affiliation_strings":["Lloyd Law College, Plot No. 11, Knowledge Park II,Greater Noida,Uttar Pradesh,201315"],"affiliations":[{"raw_affiliation_string":"Lloyd Law College, Plot No. 11, Knowledge Park II,Greater Noida,Uttar Pradesh,201315","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000810743","display_name":"K. Pushpa Rani","orcid":"https://orcid.org/0000-0002-2649-4948"},"institutions":[{"id":"https://openalex.org/I4210101034","display_name":"Birla Institute of Technology and Science - Hyderabad Campus","ror":"https://ror.org/014ctt859","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210101034","https://openalex.org/I74796645"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"K.Pushpa Rani","raw_affiliation_strings":["MLR Institute of Technology,Department of Computer Science and Engineering,Hyderabad,Telangana,India"],"affiliations":[{"raw_affiliation_string":"MLR Institute of Technology,Department of Computer Science and Engineering,Hyderabad,Telangana,India","institution_ids":["https://openalex.org/I4210101034"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5093017115","display_name":"Ali Albawi","orcid":null},"institutions":[{"id":"https://openalex.org/I3131779051","display_name":"Iraqi University","ror":"https://ror.org/01wfhkb67","country_code":"IQ","type":"education","lineage":["https://openalex.org/I3131779051"]}],"countries":["IQ"],"is_corresponding":false,"raw_author_name":"Ali Albawi","raw_affiliation_strings":["The Islamic University,College of Medical Technology,Radiology Techniques Department,Najaf,Iraq"],"affiliations":[{"raw_affiliation_string":"The Islamic University,College of Medical Technology,Radiology Techniques Department,Najaf,Iraq","institution_ids":["https://openalex.org/I3131779051"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5103280615"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.21595417,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1277","last_page":"1282"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9546999931335449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9546999931335449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9373999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11407","display_name":"Innovative Microfluidic and Catalytic Techniques Innovation","score":0.9070000052452087,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6258218288421631},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4825226962566376},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34635841846466064},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3439825475215912},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17270326614379883},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1630151867866516}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6258218288421631},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4825226962566376},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34635841846466064},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3439825475215912},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17270326614379883},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1630151867866516}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/ic3i61595.2024.10828643","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ic3i61595.2024.10828643","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 7th International Conference on Contemporary Computing and Informatics (IC3I)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W2735903900","https://openalex.org/W2799709817","https://openalex.org/W2799819179","https://openalex.org/W2924170386","https://openalex.org/W2999211502","https://openalex.org/W3013411140","https://openalex.org/W3031676723","https://openalex.org/W3041878535","https://openalex.org/W3092511540","https://openalex.org/W3096431201","https://openalex.org/W3119779909","https://openalex.org/W3132995022","https://openalex.org/W3165558508","https://openalex.org/W3175987922","https://openalex.org/W4224903304","https://openalex.org/W4289522611","https://openalex.org/W4295836565","https://openalex.org/W4300955071","https://openalex.org/W4360585275","https://openalex.org/W4364379124","https://openalex.org/W4383224715","https://openalex.org/W4387348238","https://openalex.org/W4388849303","https://openalex.org/W4391217311","https://openalex.org/W4392153523","https://openalex.org/W4392158796","https://openalex.org/W4392158883","https://openalex.org/W4392175687","https://openalex.org/W4392478182","https://openalex.org/W4396940068","https://openalex.org/W4399886303","https://openalex.org/W4399911698","https://openalex.org/W4400899189","https://openalex.org/W4400906019","https://openalex.org/W4400910562","https://openalex.org/W4400911154","https://openalex.org/W4402205114","https://openalex.org/W6866623029","https://openalex.org/W6869977300"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"HPC":[0],"technology\u2019s":[1],"rapid":[2],"rise":[3],"has":[4,119],"simplified":[5],"gene":[6,33,40,135,207,219],"expression":[7,34,41,136,208,220],"research.":[8],"A":[9],"study":[10],"proposes":[11],"AI-GEM,":[12],"which":[13,126],"stands":[14],"for":[15,181,188,212],"\u201cAI-Driven":[16],"Gene":[17,63],"Expression":[18,55],"on":[19],"High-Performance":[20],"Computing":[21],"Platforms.\u201d":[22],"We":[23,36],"devised":[24],"an":[25],"approach":[26,79,100],"to":[27,44,232],"circumvent":[28],"the":[29,84,106],"issues":[30],"associated":[31],"with":[32],"studies.":[35],"provide":[37],"a":[38,200,205,217],"full":[39],"research":[42],"strategy":[43],"improve":[45],"accuracy,":[46],"scalability,":[47],"and":[48,62,243,254],"comprehension.":[49],"AI-GEM":[50,73,95,118,132,148,155,168,189,203,215],"examined":[51],"six":[52],"methods:":[53],"GEA-HPC,":[54],"AI,":[56],"Genomic":[57],"Solver,":[58],"HPC-GENE,":[59],"Bio":[60],"AI-Express,":[61],"Xcel.":[64],"All":[65],"approaches":[66,137,165],"were":[67],"tested.":[68],"The":[69,90,154,184,194],"findings":[70],"suggest":[71],"that":[72,224],"outperforms":[74,133],"other":[75,134,146,182],"approaches.":[76,153,183],"Our":[77],"new":[78],"averages":[80],"10.8":[81],"seconds,":[82,199],"whereas":[83,163],"previous":[85,91,195],"one":[86],"took":[87],"45.7":[88],"seconds.":[89,193],"way":[92],"is":[93,96,101,190,204,216,225],"faster.":[94],"95.2%":[97],"accurate.":[98],"This":[99,112,249],"far":[102,120],"more":[103,121,227,229,238],"accurate":[104],"than":[105,123,151],"standard":[107],"$\\mathbf{7":[108],"1.":[109],"2":[110],"\\%}$.":[111],"differs":[113],"greatly":[114],"from":[115],"proper":[116],"procedures.":[117],"potential":[122],"prior":[124],"approaches,":[125],"could":[127],"only":[128],"handle":[129],"20,850":[130],"genes.":[131],"in":[138,240,246,256],"interpretability":[139],"($\\mathbf{9.":[140],"2}":[141],"\\mathbf{v":[142],"s}$.":[143],"4.4).":[144],"One":[145],"reason:":[147],"works":[149],"better":[150,234],"conventional":[152],"system":[156],"achieves":[157],"$\\mathbf{9":[158],"3":[159],"\\%}$":[160,176,180],"client":[161],"privacy,":[162,237],"traditional":[164],"obtain":[166],"58%.":[167],"uses":[169],"computer":[170],"resources":[171],"well,":[172],"scoring":[173],"$\\mathbf{8":[174],"5":[175],"vs.":[177],"$\\mathbf{6":[178],"6":[179],"final":[185],"preprocessing":[186],"time":[187],"under":[191],"3.2":[192],"best":[196],"was":[197],"13.4":[198],"significant":[201],"improvement.":[202],"novel":[206,218],"data":[209,221],"analysis":[210,222],"tool":[211,223],"powerful":[213],"computers.":[214],"faster,":[226],"accurate,":[228],"scalable,":[230],"simpler":[231],"comprehend,":[233],"at":[235],"preserving":[236],"efficient":[239],"using":[241],"resources,":[242],"reduces":[244],"difficulties":[245],"pre-processing":[247],"chores.":[248],"technology":[250],"might":[251],"aid":[252],"biology":[253],"genetics":[255],"many":[257],"ways.":[258]},"counts_by_year":[],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-10-10T00:00:00"}
