{"id":"https://openalex.org/W4401453149","doi":"https://doi.org/10.1109/hsi61632.2024.10613568","title":"Machine-Learning Analysis of mRNA: An Application to Inflammatory Bowel Disease","display_name":"Machine-Learning Analysis of mRNA: An Application to Inflammatory Bowel Disease","publication_year":2024,"publication_date":"2024-07-08","ids":{"openalex":"https://openalex.org/W4401453149","doi":"https://doi.org/10.1109/hsi61632.2024.10613568"},"language":"en","primary_location":{"id":"doi:10.1109/hsi61632.2024.10613568","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/hsi61632.2024.10613568","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 16th International Conference on Human System Interaction (HSI)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://dspace.library.uu.nl/handle/1874/455551","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076144842","display_name":"David Rojas-Vel\u00e1zquez","orcid":"https://orcid.org/0000-0003-4402-4736"},"institutions":[{"id":"https://openalex.org/I193662353","display_name":"Utrecht University","ror":"https://ror.org/04pp8hn57","country_code":"NL","type":"education","lineage":["https://openalex.org/I193662353"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"David Rojas-Velazquez","raw_affiliation_strings":["University of Utrecht,Division of Pharmacology,Utrecht,The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utrecht,Division of Pharmacology,Utrecht,The Netherlands","institution_ids":["https://openalex.org/I193662353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102913676","display_name":"Sarah Kidwai","orcid":"https://orcid.org/0000-0002-6457-2011"},"institutions":[{"id":"https://openalex.org/I193662353","display_name":"Utrecht University","ror":"https://ror.org/04pp8hn57","country_code":"NL","type":"education","lineage":["https://openalex.org/I193662353"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Sarah Kidwai","raw_affiliation_strings":["University of Utrecht,Division of Pharmacology,Utrecht,The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utrecht,Division of Pharmacology,Utrecht,The Netherlands","institution_ids":["https://openalex.org/I193662353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113434413","display_name":"Luci\u00ebnne de Vries","orcid":null},"institutions":[{"id":"https://openalex.org/I193662353","display_name":"Utrecht University","ror":"https://ror.org/04pp8hn57","country_code":"NL","type":"education","lineage":["https://openalex.org/I193662353"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Luci\u00ebnne de Vries","raw_affiliation_strings":["University of Utrecht,Division of Pharmacology,Utrecht,The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utrecht,Division of Pharmacology,Utrecht,The Netherlands","institution_ids":["https://openalex.org/I193662353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5094010062","display_name":"P\u00e9ter T\u00f6zs\u00e9r","orcid":null},"institutions":[{"id":"https://openalex.org/I193662353","display_name":"Utrecht University","ror":"https://ror.org/04pp8hn57","country_code":"NL","type":"education","lineage":["https://openalex.org/I193662353"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"P\u00e9ter T\u00f6zs\u00e9r","raw_affiliation_strings":["University of Utrecht,Division of Pharmacology,Utrecht,The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utrecht,Division of Pharmacology,Utrecht,The Netherlands","institution_ids":["https://openalex.org/I193662353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075810063","display_name":"Luis Oswaldo Valencia-Rosado","orcid":"https://orcid.org/0000-0002-9535-8093"},"institutions":[{"id":"https://openalex.org/I69181431","display_name":"Universidad de las Am\u00e9ricas Puebla","ror":"https://ror.org/01s1km724","country_code":"MX","type":"education","lineage":["https://openalex.org/I69181431"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Luis Oswaldo Valencia-Rosado","raw_affiliation_strings":["Universidad de las Am&#x00E9;ricas Puebla,Department of Computing, Electronics and Mechatronics,San Andr&#x00E9;s Cholula,Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universidad de las Am&#x00E9;ricas Puebla,Department of Computing, Electronics and Mechatronics,San Andr&#x00E9;s Cholula,Mexico","institution_ids":["https://openalex.org/I69181431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023267835","display_name":"Johan Garssen","orcid":"https://orcid.org/0000-0002-8678-9182"},"institutions":[{"id":"https://openalex.org/I193662353","display_name":"Utrecht University","ror":"https://ror.org/04pp8hn57","country_code":"NL","type":"education","lineage":["https://openalex.org/I193662353"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Johan Garssen","raw_affiliation_strings":["University of Utrecht,Division of Pharmacology,Utrecht,The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utrecht,Division of Pharmacology,Utrecht,The Netherlands","institution_ids":["https://openalex.org/I193662353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038913522","display_name":"Alberto Tonda","orcid":"https://orcid.org/0000-0001-5895-4809"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210127056","display_name":"Laboratoire Mati\u00e8re et Syst\u00e8mes Complexes","ror":"https://ror.org/032w6q449","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210095849","https://openalex.org/I4210127056"]},{"id":"https://openalex.org/I4403386758","display_name":"Institut des Syst\u00e8mes Complexes Paris \u00cele-de-France","ror":"https://ror.org/04k1akk19","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4403386758"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alberto Tonda","raw_affiliation_strings":["Universit&#x00E9; Paris-Saclay, Institut des Syst&#x00E8;mes Complexes de Paris &#x00CE; le-de-France (ISC-PIF) - UAR 3611 CNRS,UMR 518 MIA-PS, INRAE,Paris,France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit&#x00E9; Paris-Saclay, Institut des Syst&#x00E8;mes Complexes de Paris &#x00CE; le-de-France (ISC-PIF) - UAR 3611 CNRS,UMR 518 MIA-PS, INRAE,Paris,France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210088668","https://openalex.org/I4210127056","https://openalex.org/I4403386758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046184914","display_name":"Alejandro Lopez\u2010Rincon","orcid":"https://orcid.org/0000-0003-4491-5889"},"institutions":[{"id":"https://openalex.org/I193662353","display_name":"Utrecht University","ror":"https://ror.org/04pp8hn57","country_code":"NL","type":"education","lineage":["https://openalex.org/I193662353"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Alejandro Lopez-Rincon","raw_affiliation_strings":["University of Utrecht,Division of Pharmacology,Utrecht,The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utrecht,Division of Pharmacology,Utrecht,The Netherlands","institution_ids":["https://openalex.org/I193662353"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13843352,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"20","issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10134","display_name":"Inflammatory Bowel Disease","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10134","display_name":"Inflammatory Bowel Disease","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.9799000024795532,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9589999914169312,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inflammatory-bowel-disease","display_name":"Inflammatory bowel disease","score":0.8185422420501709},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5356886386871338},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.441692054271698},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37831687927246094},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.3680777847766876},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.34334278106689453},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1793988049030304}],"concepts":[{"id":"https://openalex.org/C2778260677","wikidata":"https://www.wikidata.org/wiki/Q917447","display_name":"Inflammatory bowel disease","level":3,"score":0.8185422420501709},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5356886386871338},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.441692054271698},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37831687927246094},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.3680777847766876},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.34334278106689453},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1793988049030304}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/hsi61632.2024.10613568","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/hsi61632.2024.10613568","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 16th International Conference on Human System Interaction (HSI)","raw_type":"proceedings-article"},{"id":"pmh:oai:dspace.library.uu.nl:1874/455551","is_oa":true,"landing_page_url":"https://dspace.library.uu.nl/handle/1874/455551","pdf_url":null,"source":{"id":"https://openalex.org/S4306401649","display_name":"Utrecht University Repository (Utrecht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193662353","host_organization_name":"Utrecht University","host_organization_lineage":["https://openalex.org/I193662353"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Part of book"},{"id":"pmh:oai:dspace.library.uu.nl:1874/482206","is_oa":true,"landing_page_url":"https://dspace.library.uu.nl/handle/1874/482206","pdf_url":null,"source":{"id":"https://openalex.org/S4306401649","display_name":"Utrecht University Repository (Utrecht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193662353","host_organization_name":"Utrecht University","host_organization_lineage":["https://openalex.org/I193662353"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Part of book"}],"best_oa_location":{"id":"pmh:oai:dspace.library.uu.nl:1874/455551","is_oa":true,"landing_page_url":"https://dspace.library.uu.nl/handle/1874/455551","pdf_url":null,"source":{"id":"https://openalex.org/S4306401649","display_name":"Utrecht University Repository (Utrecht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193662353","host_organization_name":"Utrecht University","host_organization_lineage":["https://openalex.org/I193662353"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Part of book"},"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W1983015290","https://openalex.org/W1986079650","https://openalex.org/W1986775143","https://openalex.org/W2053992818","https://openalex.org/W2090071444","https://openalex.org/W2101234009","https://openalex.org/W2118164870","https://openalex.org/W2145245891","https://openalex.org/W2148388080","https://openalex.org/W2297078982","https://openalex.org/W2531786950","https://openalex.org/W2534617315","https://openalex.org/W2564086294","https://openalex.org/W2579322339","https://openalex.org/W2588920758","https://openalex.org/W2739892638","https://openalex.org/W2974261289","https://openalex.org/W2978527015","https://openalex.org/W2978806101","https://openalex.org/W2981679558","https://openalex.org/W2989173305","https://openalex.org/W2999309192","https://openalex.org/W3012021000","https://openalex.org/W3038751622","https://openalex.org/W3047909371","https://openalex.org/W3048579307","https://openalex.org/W3085688603","https://openalex.org/W3093730473","https://openalex.org/W3120505451","https://openalex.org/W3130192318","https://openalex.org/W3156905130","https://openalex.org/W3198135985","https://openalex.org/W3199279817","https://openalex.org/W4200289029","https://openalex.org/W4282929204","https://openalex.org/W4293763357","https://openalex.org/W4307188382","https://openalex.org/W4309913142","https://openalex.org/W4311359803","https://openalex.org/W4313060504","https://openalex.org/W4321004601","https://openalex.org/W4327811335","https://openalex.org/W4366606077","https://openalex.org/W4381715871","https://openalex.org/W4386944286","https://openalex.org/W4390885541","https://openalex.org/W6741832895","https://openalex.org/W6767726601","https://openalex.org/W6769224458","https://openalex.org/W6846666444","https://openalex.org/W6851986493","https://openalex.org/W6861320361","https://openalex.org/W6862176846","https://openalex.org/W6862546430"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4207046311","https://openalex.org/W4364306694","https://openalex.org/W4312192474"],"abstract_inverted_index":{"Inflammatory":[0],"Bowel":[1],"Disease":[2],"(IBD),":[3],"that":[4,78],"includes":[5],"Crohn's":[6],"disease":[7,47],"(CD)":[8],"and":[9,48,55,88,126,151,167,177,200],"Ulcerative":[10],"Colitis":[11],"(UC),":[12],"is":[13,27],"a":[14,28,33,65,169],"global":[15],"health":[16],"concern":[17],"due":[18,31],"to":[19,32,67,73,107,162,171,193],"the":[20,46,100,129,132,148,157,164,175,195,198],"increasing":[21],"number":[22,35],"of":[23,36,80,197],"cases.":[24],"Diagnosing":[25],"IBD":[26,42,112],"challenging":[29],"task":[30],"considerable":[34],"clinical":[37],"factors.":[38],"Delayed":[39],"or":[40],"inaccurate":[41],"diagnosis":[43,54],"can":[44],"worsen":[45],"complicate":[49],"achieving":[50],"remission,":[51],"therefore,":[52],"early":[53],"prompt":[56],"treatment":[57],"are":[58],"crucial.":[59],"In":[60],"this":[61,93],"study,":[62],"we":[63,127],"adapted":[64],"methodology":[66,94,176,199],"analyze":[68,74],"16s":[69],"rRNA":[70],"(18,758":[71],"features)":[72,77],"mRNA":[75,97],"(54,675":[76],"consists":[79],"three":[81,117],"phases:":[82],"1)":[83],"preprocessing,":[84],"2)":[85],"feature":[86,123,143,179,205],"selection,":[87],"3)":[89],"testing.":[90],"We":[91,114,135],"applied":[92],"for":[95,111,122,201],"analyzing":[96],"datasets":[98],"from":[99,141],"Gene":[101],"Expression":[102],"Omnibus":[103],"(GEO)":[104],"repository,":[105],"aiming":[106],"discover":[108],"possible":[109],"biomarkers":[110],"diagnosis.":[113],"experimented":[115],"with":[116,138,203],"datasets,":[118],"using":[119],"one":[120],"dataset":[121],"(gene)":[124],"selection":[125,144,180,206],"tested":[128],"results":[130,137,173],"in":[131],"other":[133,142,178,204],"two.":[134],"compared":[136],"those":[139],"obtained":[140],"methods,":[145],"such":[146],"as":[147,168,189],"F-score-based":[149],"K-Best":[150],"random":[152],"selection.":[153],"The":[154,182],"Area":[155],"Under":[156],"Curve":[158],"(AUC)":[159],"was":[160,187],"used":[161,188],"measure":[163],"diagnostic":[165],"accuracy":[166],"metric":[170,192],"compare":[172],"between":[174],"methods.":[181,207],"Matthews":[183],"Correlation":[184],"Coefficient":[185],"(MCC)":[186],"an":[190],"additional":[191],"evaluate":[194],"performance":[196],"comparison":[202]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
