{"id":"https://openalex.org/W2989870072","doi":"https://doi.org/10.1109/hpec.2019.8916521","title":"IdPrism: Rapid Analysis of Forensic DNA Samples Using MPS SNP Profiles","display_name":"IdPrism: Rapid Analysis of Forensic DNA Samples Using MPS SNP Profiles","publication_year":2019,"publication_date":"2019-09-01","ids":{"openalex":"https://openalex.org/W2989870072","doi":"https://doi.org/10.1109/hpec.2019.8916521","mag":"2989870072"},"language":"en","primary_location":{"id":"doi:10.1109/hpec.2019.8916521","is_oa":false,"landing_page_url":"https://doi.org/10.1109/hpec.2019.8916521","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE High Performance Extreme Computing Conference (HPEC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031850946","display_name":"Darrell Ricke","orcid":"https://orcid.org/0000-0002-2842-2809"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]},{"id":"https://openalex.org/I4210122954","display_name":"MIT Lincoln Laboratory","ror":"https://ror.org/022z6jk58","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210122954","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Darrell O. Ricke","raw_affiliation_strings":["Bioengineering Systems & Technologies Massachusetts Institute of Technology Lincoln Laboratory, Lexington, MA, USA"],"affiliations":[{"raw_affiliation_string":"Bioengineering Systems & Technologies Massachusetts Institute of Technology Lincoln Laboratory, Lexington, MA, USA","institution_ids":["https://openalex.org/I4210122954","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063338611","display_name":"James L. Watkins","orcid":null},"institutions":[{"id":"https://openalex.org/I4210122954","display_name":"MIT Lincoln Laboratory","ror":"https://ror.org/022z6jk58","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210122954","https://openalex.org/I63966007"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Watkins","raw_affiliation_strings":["Bioengineering Systems & Technologies Massachusetts Institute of Technology Lincoln Laboratory, Lexington, MA, USA"],"affiliations":[{"raw_affiliation_string":"Bioengineering Systems & Technologies Massachusetts Institute of Technology Lincoln Laboratory, Lexington, MA, USA","institution_ids":["https://openalex.org/I4210122954","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067619524","display_name":"Philip Fremont\u2010Smith","orcid":"https://orcid.org/0000-0002-2061-5809"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]},{"id":"https://openalex.org/I4210122954","display_name":"MIT Lincoln Laboratory","ror":"https://ror.org/022z6jk58","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210122954","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip Fremont-Smith","raw_affiliation_strings":["Bioengineering Systems & Technologies Massachusetts Institute of Technology Lincoln Laboratory, Lexington, MA, USA"],"affiliations":[{"raw_affiliation_string":"Bioengineering Systems & Technologies Massachusetts Institute of Technology Lincoln Laboratory, Lexington, MA, USA","institution_ids":["https://openalex.org/I4210122954","https://openalex.org/I63966007"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016624503","display_name":"Adam Michaleas","orcid":"https://orcid.org/0000-0001-7402-8303"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]},{"id":"https://openalex.org/I4210122954","display_name":"MIT Lincoln Laboratory","ror":"https://ror.org/022z6jk58","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210122954","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Michaleas","raw_affiliation_strings":["Bioengineering Systems & Technologies Massachusetts Institute of Technology Lincoln Laboratory, Lexington, MA, USA"],"affiliations":[{"raw_affiliation_string":"Bioengineering Systems & Technologies Massachusetts Institute of Technology Lincoln Laboratory, Lexington, MA, USA","institution_ids":["https://openalex.org/I4210122954","https://openalex.org/I63966007"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5031850946"],"corresponding_institution_ids":["https://openalex.org/I4210122954","https://openalex.org/I63966007"],"apc_list":null,"apc_paid":null,"fwci":0.0852,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.48115201,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"6","issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.7629203200340271},{"id":"https://openalex.org/keywords/massive-parallel-sequencing","display_name":"Massive parallel sequencing","score":0.7290940880775452},{"id":"https://openalex.org/keywords/snp-array","display_name":"SNP array","score":0.648257851600647},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.6040568351745605},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5096926689147949},{"id":"https://openalex.org/keywords/forensic-identification","display_name":"Forensic identification","score":0.5087383389472961},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5036928057670593},{"id":"https://openalex.org/keywords/forensic-science","display_name":"Forensic science","score":0.4934031069278717},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4512275457382202},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.44114628434181213},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4079662263393402},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3685004711151123},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36613279581069946},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12490290403366089},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.11492305994033813}],"concepts":[{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.7629203200340271},{"id":"https://openalex.org/C192800701","wikidata":"https://www.wikidata.org/wiki/Q6784807","display_name":"Massive parallel sequencing","level":4,"score":0.7290940880775452},{"id":"https://openalex.org/C122060243","wikidata":"https://www.wikidata.org/wiki/Q7391885","display_name":"SNP array","level":5,"score":0.648257851600647},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.6040568351745605},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5096926689147949},{"id":"https://openalex.org/C2780732888","wikidata":"https://www.wikidata.org/wiki/Q2314618","display_name":"Forensic identification","level":2,"score":0.5087383389472961},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5036928057670593},{"id":"https://openalex.org/C140505726","wikidata":"https://www.wikidata.org/wiki/Q495304","display_name":"Forensic science","level":2,"score":0.4934031069278717},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4512275457382202},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.44114628434181213},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4079662263393402},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3685004711151123},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36613279581069946},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12490290403366089},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.11492305994033813},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/hpec.2019.8916521","is_oa":false,"landing_page_url":"https://doi.org/10.1109/hpec.2019.8916521","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE High Performance Extreme Computing Conference (HPEC)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W2070303561","https://openalex.org/W2093982068","https://openalex.org/W2095909932","https://openalex.org/W2100661421","https://openalex.org/W2108234281","https://openalex.org/W2122732537","https://openalex.org/W2125330218","https://openalex.org/W2188530147","https://openalex.org/W2213582423","https://openalex.org/W2338352780","https://openalex.org/W2352981993","https://openalex.org/W2742453297","https://openalex.org/W2744791474","https://openalex.org/W2754676336","https://openalex.org/W2764200444","https://openalex.org/W2800034916","https://openalex.org/W2952191559","https://openalex.org/W2952358882","https://openalex.org/W6743879040","https://openalex.org/W6745375422"],"related_works":["https://openalex.org/W2993845269","https://openalex.org/W2366729575","https://openalex.org/W3095544300","https://openalex.org/W783038910","https://openalex.org/W2579378686","https://openalex.org/W2735002055","https://openalex.org/W2527728540","https://openalex.org/W2508090146","https://openalex.org/W66951175","https://openalex.org/W2135364516"],"abstract_inverted_index":{"Massively":[0],"parallel":[1],"sequencing":[2],"(MPS)":[3],"of":[4,14,31,47,49,63,65,78,88,90,95,97,104],"large":[5],"single":[6],"nucleotide":[7],"polymorphism":[8],"(SNP)":[9],"panels":[10],"enables":[11],"identification,":[12],"analysis":[13,71,77],"complex":[15,41],"DNA":[16,112],"mixture":[17,42],"samples,":[18],"and":[19,37,40,54],"extended":[20],"kinship":[21],"predictions.":[22],"Computational":[23],"challenges":[24],"related":[25],"to":[26,45,61,86],"SNP":[27,66,70,91],"allele":[28],"calling,":[29],"probability":[30],"random":[32],"man":[33],"not":[34],"excluded":[35],"calculations,":[36],"both":[38],"reference":[39,50,98],"sample":[43],"comparisons":[44],"tens":[46,62,87,94],"millions":[48,96],"profiles":[51],"were":[52],"encountered":[53],"resolved":[55],"when":[56],"scaling":[57],"up":[58],"from":[59],"thousands":[60,64,85,89],"loci.":[67],"A":[68],"MPS":[69],"pipeline":[72,101],"is":[73,102],"described":[74],"for":[75,84],"rapid":[76],"forensic":[79,113],"deoxyribonucleic":[80],"acid":[81],"(DNA)":[82],"samples":[83],"loci":[92],"against":[93],"profiles.":[99],"This":[100],"part":[103],"the":[105],"MIT":[106],"Lincoln":[107],"Laboratory":[108],"(MITLL)":[109],"IdPrism":[110],"advanced":[111],"system.":[114]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
