{"id":"https://openalex.org/W2135933357","doi":"https://doi.org/10.1109/hpdc.2002.1029942","title":"BioGRID - An European grid for molecular biology","display_name":"BioGRID - An European grid for molecular biology","publication_year":2003,"publication_date":"2003-06-25","ids":{"openalex":"https://openalex.org/W2135933357","doi":"https://doi.org/10.1109/hpdc.2002.1029942","mag":"2135933357"},"language":"en","primary_location":{"id":"doi:10.1109/hpdc.2002.1029942","is_oa":false,"landing_page_url":"https://doi.org/10.1109/hpdc.2002.1029942","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings 11th IEEE International Symposium on High Performance Distributed Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114376658","display_name":"Piotr Ba\u0142a","orcid":"https://orcid.org/0000-0001-7410-7482"},"institutions":[{"id":"https://openalex.org/I3019271933","display_name":"Nicolaus Copernicus University","ror":"https://ror.org/0102mm775","country_code":"PL","type":"education","lineage":["https://openalex.org/I3019271933"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"P. Bala","raw_affiliation_strings":["Faculty of Mathematics and Computer Science, N. Copernicus University, Torun, Poland"],"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, N. Copernicus University, Torun, Poland","institution_ids":["https://openalex.org/I3019271933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050879695","display_name":"Jaros\u0142aw Pytli\u0144ski","orcid":null},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"J. Pytlinski","raw_affiliation_strings":["ICM Warsaw University, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"ICM Warsaw University, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045402341","display_name":"Miros\u0142aw Nazaruk","orcid":null},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"M. Nazaruk","raw_affiliation_strings":["ICM Warsaw University, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"ICM Warsaw University, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5114376658"],"corresponding_institution_ids":["https://openalex.org/I3019271933"],"apc_list":null,"apc_paid":null,"fwci":1.1804,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.84171262,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"412","last_page":"412"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9682000279426575,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.965499997138977,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7344895601272583},{"id":"https://openalex.org/keywords/grid-computing","display_name":"Grid computing","score":0.6922889947891235},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.6858041882514954},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.6326791644096375},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.5821300745010376},{"id":"https://openalex.org/keywords/problem-solving-environment","display_name":"Problem solving environment","score":0.5177156925201416},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4769952893257141},{"id":"https://openalex.org/keywords/middleware","display_name":"Middleware (distributed applications)","score":0.46657049655914307},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4611290991306305},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.4395756125450134},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4078628122806549},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.37545934319496155},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.33764296770095825}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7344895601272583},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.6922889947891235},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.6858041882514954},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.6326791644096375},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.5821300745010376},{"id":"https://openalex.org/C2780665868","wikidata":"https://www.wikidata.org/wiki/Q7246952","display_name":"Problem solving environment","level":2,"score":0.5177156925201416},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4769952893257141},{"id":"https://openalex.org/C169468491","wikidata":"https://www.wikidata.org/wiki/Q146923","display_name":"Middleware (distributed applications)","level":2,"score":0.46657049655914307},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4611290991306305},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.4395756125450134},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4078628122806549},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.37545934319496155},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.33764296770095825},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/hpdc.2002.1029942","is_oa":false,"landing_page_url":"https://doi.org/10.1109/hpdc.2002.1029942","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings 11th IEEE International Symposium on High Performance Distributed Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6299999952316284}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320291","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320323078","display_name":"Universitetet i Bergen","ror":"https://ror.org/03zga2b32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":4,"referenced_works":["https://openalex.org/W2022950330","https://openalex.org/W2103815459","https://openalex.org/W2162166182","https://openalex.org/W2170684078"],"related_works":["https://openalex.org/W2162974494","https://openalex.org/W3180179400","https://openalex.org/W2118366689","https://openalex.org/W2154998455","https://openalex.org/W2116888309","https://openalex.org/W2477652530","https://openalex.org/W2039055059","https://openalex.org/W2381088774","https://openalex.org/W1968246720","https://openalex.org/W2281900275"],"abstract_inverted_index":{"Recent":[0],"advances":[1],"in":[2,53,63,309,327,330],"computer":[3,105,283],"technology,":[4],"especially":[5],"grid":[6,77,84,131,194],"tools":[7,125],"makes":[8],"them":[9],"good":[10],"candidate":[11],"for":[12,44,141,174,235,299,351,360],"development":[13,65,300],"of":[14,29,38,57,66,145,180,203,214,339],"user":[15,109,160,211,217,302,343],"interfaces":[16],"to":[17,73,89,103,110,122,165,172,252,281,285,304,314,332,346],"computing":[18,168],"programs":[19],"and":[20,33,36,49,96,113,118,139,206,232,249,278,365,370],"resources.":[21],"Computational":[22],"grids":[23],"enable":[24],"sharing":[25],"a":[26,162],"wide":[27],"variety":[28],"geographically":[30],"distributed":[31,39,167],"resources":[32,40,106,169,233],"allow":[34],"selection":[35],"aggregation":[37],"across":[41],"multiple":[42],"organizations":[43],"solving":[45],"large":[46],"scale":[47],"computational":[48,76],"data":[50],"intensive":[51],"problems":[52],"science.":[54],"User":[55,147,227,242,273],"point":[56],"view":[58],"is":[59,81,100,136,190,312,325],"most":[60,361],"important":[61],"principle":[62],"the":[64,67,90,104,123,146,157,181,197,215,253,263,267,286,289,305,315,328,333,340,347],"UNICORE":[68,99,128,158,182,188,220,239,264,290,296,316],"software":[69],"which":[70,85,107,349],"was":[71],"used":[72,295],"establish":[74],"European":[75],"-":[78,219,222],"EUROGRID.":[79],"BioGRID":[80],"application":[82,115,353],"oriented":[83],"adopts":[86],"EUROGRID":[87],"infrastructure":[88],"specific":[91,116,354],"area,":[92],"namely":[93],"molecular":[94,366],"biology":[95],"quantum":[97,151,363],"chemistry.":[98],"uniform":[101],"interface":[102,148,218,303],"allows":[108,140,350],"prepare,":[111],"submit":[112],"control":[114],"jobs":[117,236],"file":[119],"transfers.":[120],"Compare":[121],"other":[124,193],"BioGRID,":[126],"using":[127,237],"as":[129,192,224,297,337],"main":[130],"tool,":[132],"has":[133,161],"wider":[134],"functionality,":[135],"more":[137],"flexible":[138],"much":[142],"easier":[143],"integration":[144],"with":[149,266,288],"external":[150],"chemistry":[152],"or":[153,176,320],"biomolecular":[154,306],"applications.":[155,307],"Within":[156],"environment":[159],"comfortable":[163],"way":[164],"use":[166],"without":[170],"having":[171],"learn":[173],"site":[175],"system":[177,208,231],"specifics.":[178],"Details":[179],"can":[183,228,243,259,274],"be":[184,260],"found":[185],"elsewhere.":[186],"The":[187,210],"architecture":[189],"based,":[191],"middleware,":[195],"on":[196,321],"three":[198],"tier":[199,212],"model.":[200],"It":[201],"consists":[202,213],"user,":[204],"server":[205],"target":[207,230],"tier.":[209],"graphical":[216],"client":[221,240,265,271,291,317],"written":[223],"Java":[225,310],"application.":[226],"specify":[229],"required":[234],"standard":[238,334],"facilities.":[241],"check":[244],"job":[245,276],"status,":[246],"monitor":[247,275],"execution":[248],"retrieve":[250,279],"output":[251,280],"local":[254],"workstation.":[255],"All":[256],"these":[257],"functions":[258],"performed":[261],"from":[262],"single":[268],"login":[269],"during":[270,318],"startup.":[272],"status":[277],"any":[282],"connected":[284],"network":[287],"installed.":[292],"We":[293],"have":[294],"framework":[298],"dedicated":[301],"Written":[308],"plugin":[311],"loaded":[313],"start,":[319],"request.":[322],"Once":[323],"it":[324],"available":[326,359],"client,":[329],"addition":[331],"futures":[335],"such":[336],"preparation":[338,352],"script":[341],"job,":[342],"gets":[344],"access":[345],"menu":[348],"job.":[355],"Currently":[356],"plugins":[357],"are":[358],"popular":[362],"mechanical":[364],"dynamics":[367],"codes:":[368],"Gaussian98":[369],"Amber.":[371]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
