{"id":"https://openalex.org/W2132904787","doi":"https://doi.org/10.1109/hpcsim.2012.6266916","title":"Parallelisation strategies for large scale cellular automata frameworks in pharmaceutical modelling","display_name":"Parallelisation strategies for large scale cellular automata frameworks in pharmaceutical modelling","publication_year":2012,"publication_date":"2012-07-01","ids":{"openalex":"https://openalex.org/W2132904787","doi":"https://doi.org/10.1109/hpcsim.2012.6266916","mag":"2132904787"},"language":"en","primary_location":{"id":"doi:10.1109/hpcsim.2012.6266916","is_oa":false,"landing_page_url":"https://doi.org/10.1109/hpcsim.2012.6266916","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 International Conference on High Performance Computing &amp; Simulation (HPCS)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://doras.dcu.ie/21693/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060543167","display_name":"Marija Bezbradica","orcid":"https://orcid.org/0000-0001-9366-5113"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I205274468","display_name":"Trinity College Dublin","ror":"https://ror.org/02tyrky19","country_code":"IE","type":"education","lineage":["https://openalex.org/I205274468"]},{"id":"https://openalex.org/I2802744477","display_name":"Irish Centre for High-End Computing","ror":"https://ror.org/04te6a418","country_code":"IE","type":"funder","lineage":["https://openalex.org/I2802744477"]},{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Marija Bezbradica","raw_affiliation_strings":["Centre for Scientific Computing and Complex Systems Modelling, School of Computing, University of Dublin, Dublin, Ireland","Centre for Scientific Computing and Complex Systems Modelling, School of Computing, Dublin City University, Dublin 9, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Scientific Computing and Complex Systems Modelling, School of Computing, University of Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I100930933","https://openalex.org/I205274468"]},{"raw_affiliation_string":"Centre for Scientific Computing and Complex Systems Modelling, School of Computing, Dublin City University, Dublin 9, Ireland","institution_ids":["https://openalex.org/I2802744477","https://openalex.org/I42934936"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038645621","display_name":"Martin Crane","orcid":"https://orcid.org/0000-0001-7598-3126"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I205274468","display_name":"Trinity College Dublin","ror":"https://ror.org/02tyrky19","country_code":"IE","type":"education","lineage":["https://openalex.org/I205274468"]},{"id":"https://openalex.org/I2802744477","display_name":"Irish Centre for High-End Computing","ror":"https://ror.org/04te6a418","country_code":"IE","type":"funder","lineage":["https://openalex.org/I2802744477"]},{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Martin Crane","raw_affiliation_strings":["Centre for Scientific Computing and Complex Systems Modelling, School of Computing, University of Dublin, Dublin, Ireland","Centre for Scientific Computing and Complex Systems Modelling, School of Computing, Dublin City University, Dublin 9, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Scientific Computing and Complex Systems Modelling, School of Computing, University of Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I100930933","https://openalex.org/I205274468"]},{"raw_affiliation_string":"Centre for Scientific Computing and Complex Systems Modelling, School of Computing, Dublin City University, Dublin 9, Ireland","institution_ids":["https://openalex.org/I2802744477","https://openalex.org/I42934936"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022379752","display_name":"Heather J. Ruskin","orcid":"https://orcid.org/0000-0001-7101-2242"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I205274468","display_name":"Trinity College Dublin","ror":"https://ror.org/02tyrky19","country_code":"IE","type":"education","lineage":["https://openalex.org/I205274468"]},{"id":"https://openalex.org/I2802744477","display_name":"Irish Centre for High-End Computing","ror":"https://ror.org/04te6a418","country_code":"IE","type":"funder","lineage":["https://openalex.org/I2802744477"]},{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Heather J. Ruskin","raw_affiliation_strings":["Centre for Scientific Computing and Complex Systems Modelling, School of Computing, University of Dublin, Dublin, Ireland","Centre for Scientific Computing and Complex Systems Modelling, School of Computing, Dublin City University, Dublin 9, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Scientific Computing and Complex Systems Modelling, School of Computing, University of Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I100930933","https://openalex.org/I205274468"]},{"raw_affiliation_string":"Centre for Scientific Computing and Complex Systems Modelling, School of Computing, Dublin City University, Dublin 9, Ireland","institution_ids":["https://openalex.org/I2802744477","https://openalex.org/I42934936"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.145,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.75140496,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"223","last_page":"230"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12162","display_name":"Cellular Automata and Applications","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12162","display_name":"Cellular Automata and Applications","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11195","display_name":"Simulation Techniques and Applications","score":0.9031999707221985,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7895675897598267},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.63617342710495},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.6267436742782593},{"id":"https://openalex.org/keywords/cellular-automaton","display_name":"Cellular automaton","score":0.538932740688324},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.5352455377578735},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5138252377510071},{"id":"https://openalex.org/keywords/overhead","display_name":"Overhead (engineering)","score":0.47585317492485046},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.45573198795318604},{"id":"https://openalex.org/keywords/concurrency","display_name":"Concurrency","score":0.4224613606929779},{"id":"https://openalex.org/keywords/automaton","display_name":"Automaton","score":0.4170491099357605},{"id":"https://openalex.org/keywords/combinatorial-explosion","display_name":"Combinatorial explosion","score":0.41332775354385376},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.412977933883667},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3289867341518402},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17516973614692688},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09984669089317322}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7895675897598267},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.63617342710495},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.6267436742782593},{"id":"https://openalex.org/C35527583","wikidata":"https://www.wikidata.org/wiki/Q189156","display_name":"Cellular automaton","level":2,"score":0.538932740688324},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.5352455377578735},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5138252377510071},{"id":"https://openalex.org/C2779960059","wikidata":"https://www.wikidata.org/wiki/Q7113681","display_name":"Overhead (engineering)","level":2,"score":0.47585317492485046},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.45573198795318604},{"id":"https://openalex.org/C193702766","wikidata":"https://www.wikidata.org/wiki/Q1414548","display_name":"Concurrency","level":2,"score":0.4224613606929779},{"id":"https://openalex.org/C112505250","wikidata":"https://www.wikidata.org/wiki/Q787116","display_name":"Automaton","level":2,"score":0.4170491099357605},{"id":"https://openalex.org/C115908005","wikidata":"https://www.wikidata.org/wiki/Q2668364","display_name":"Combinatorial explosion","level":2,"score":0.41332775354385376},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.412977933883667},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3289867341518402},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17516973614692688},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09984669089317322},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/hpcsim.2012.6266916","is_oa":false,"landing_page_url":"https://doi.org/10.1109/hpcsim.2012.6266916","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 International Conference on High Performance Computing &amp; Simulation (HPCS)","raw_type":"proceedings-article"},{"id":"pmh:oai:doras.dcu.ie:21693","is_oa":false,"landing_page_url":"http://doras.dcu.ie/21693/1/7DF6.tmp.pdf","pdf_url":"http://doras.dcu.ie/21693/1/7DF6.tmp.pdf","source":{"id":"https://openalex.org/S4306401511","display_name":"Dublin City University Open Access Institutional Repository (Dublin City University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I42934936","host_organization_name":"Dublin City University","host_organization_lineage":["https://openalex.org/I42934936"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Conference or Workshop Item"},{"id":"pmh:http://www.rian.ie/135513/","is_oa":true,"landing_page_url":"http://doras.dcu.ie/21693/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400033","display_name":"Arrow@dit (Dublin Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I115570527","host_organization_name":"Dublin Institute of Technology","host_organization_lineage":["https://openalex.org/I115570527"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Other"}],"best_oa_location":{"id":"pmh:http://www.rian.ie/135513/","is_oa":true,"landing_page_url":"http://doras.dcu.ie/21693/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400033","display_name":"Arrow@dit (Dublin Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I115570527","host_organization_name":"Dublin Institute of Technology","host_organization_lineage":["https://openalex.org/I115570527"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Other"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321056","display_name":"Irish Research Council","ror":"https://ror.org/051xex213"},{"id":"https://openalex.org/F4320330055","display_name":"Irish Centre for High-End Computing","ror":"https://ror.org/04te6a418"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W2281010","https://openalex.org/W335964859","https://openalex.org/W1990840120","https://openalex.org/W1995424714","https://openalex.org/W1997512351","https://openalex.org/W2021867373","https://openalex.org/W2048393105","https://openalex.org/W2056662119","https://openalex.org/W2063543655","https://openalex.org/W2068204079","https://openalex.org/W2073866125","https://openalex.org/W2084933391","https://openalex.org/W2168240094","https://openalex.org/W6600098420"],"related_works":["https://openalex.org/W2058965144","https://openalex.org/W2164382479","https://openalex.org/W98480971","https://openalex.org/W2150291671","https://openalex.org/W2027972911","https://openalex.org/W2146343568","https://openalex.org/W2574965914","https://openalex.org/W1490475243","https://openalex.org/W2107902391","https://openalex.org/W3197823126"],"abstract_inverted_index":{"Cellular":[0],"Automata":[1],"(CA)":[2],"properties":[3],"facilitate":[4],"the":[5,9,44,72,81,99,106,117,167,172,178,185],"detail":[6],"required":[7],"for":[8,194,199,218],"bottom-up":[10],"approach":[11],"to":[12,42,91,122,141,148,165,177],"modelling":[13],"and":[14,38,51,163,192,196,202],"simulation":[15,168,200],"of":[16,20,31,46,63,83,93,101,110,174,208,221],"a":[17,29,142],"broad":[18],"range":[19],"physico-chemical":[21],"reactions.":[22],"In":[23,133],"pharmaceutical":[24,124],"applications,":[25],"CA":[26,118,145],"models":[27,62,95,112],"use":[28,154],"combination":[30],"discrete-event":[32],"rules":[33],"based":[34],"on":[35],"probabilistic":[36],"distributions":[37],"fundamental":[39],"physical":[40],"laws":[41],"predict":[43],"behaviour":[45,115],"active":[47],"substances":[48],"(drug":[49],"molecules)":[50],"structural":[52],"changes":[53],"in":[54,71,80,120,184],"Drug":[55],"Dissolution":[56],"Systems":[57],"(DDS)":[58],"over":[59],"time.":[60],"Several":[61],"this":[64,134],"type":[65],"have":[66],"been":[67],"described":[68],"so":[69],"far":[70],"scientific":[73],"literature.":[74],"Yet,":[75],"practical":[76],"applications":[77],"are":[78],"lacking":[79],"context":[82],"large-scale,":[84],"high-precision,":[85],"high-fidelity":[86],"simulations.":[87],"The":[88],"key":[89],"obstacle":[90],"parallelisation":[92,139,222],"such":[94],"is":[96,215],"not":[97],"only":[98],"amount":[100],"data":[102],"involved,":[103],"but":[104],"also":[105],"fact":[107],"that":[108,213],"many":[109],"these":[111,206],"incorporate":[113],"agent-like":[114],"within":[116],"framework":[119],"order":[121],"describe":[123],"components.":[125],"This":[126],"makes":[127],"communication":[128,198],"across":[129],"process":[130],"boundaries":[131],"expensive.":[132],"paper,":[135],"we":[136],"apply":[137],"different":[138],"strategies":[140],"large":[143],"scale":[144],"framework,":[146],"used":[147],"model":[149],"coated":[150],"drug":[151],"spheres.":[152],"We":[153,170,188],"two":[155],"parallel-computing":[156],"application":[157],"programming":[158],"interfaces":[159],"(APIs),":[160],"namely":[161],"OpenMP":[162],"MPI,":[164],"partition":[166],"space.":[169],"analyse":[171],"applicability":[173],"each":[175],"API":[176],"problem":[179],"individually,":[180],"as":[181,183],"well":[182],"hybrid":[186],"solution.":[187],"examine":[189],"speedup":[190],"potential":[191],"overhead":[193],"local":[195],"global":[197],"speed":[201],"solution":[203],"scalability.":[204],"For":[205],"types":[207],"problems,":[209],"our":[210],"results":[211],"show":[212],"performance":[214],"much":[216],"improved":[217],"appropriate":[219],"combinations":[220],"solutions.":[223]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
