{"id":"https://openalex.org/W3084155268","doi":"https://doi.org/10.1109/hpcs48598.2019.9188174","title":"optimizations in CuSNP Simulator for Spiking Neural P Systems on CUDA GPUs","display_name":"optimizations in CuSNP Simulator for Spiking Neural P Systems on CUDA GPUs","publication_year":2019,"publication_date":"2019-07-01","ids":{"openalex":"https://openalex.org/W3084155268","doi":"https://doi.org/10.1109/hpcs48598.2019.9188174","mag":"3084155268"},"language":"en","primary_location":{"id":"doi:10.1109/hpcs48598.2019.9188174","is_oa":false,"landing_page_url":"https://doi.org/10.1109/hpcs48598.2019.9188174","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 International Conference on High Performance Computing &amp; Simulation (HPCS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://idus.us.es/handle//11441/106472","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066150872","display_name":"Blaine Corwyn D. Aboy","orcid":null},"institutions":[{"id":"https://openalex.org/I87074743","display_name":"University of the Philippines Diliman","ror":"https://ror.org/03tbh6y23","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I87074743"]}],"countries":["PH"],"is_corresponding":true,"raw_author_name":"Blaine Corwyn D. Aboy","raw_affiliation_strings":["dept. of Computer Science, University of the Philippines Diliman, Quezon city"],"affiliations":[{"raw_affiliation_string":"dept. of Computer Science, University of the Philippines Diliman, Quezon city","institution_ids":["https://openalex.org/I87074743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046308929","display_name":"Edward James A. Bariring","orcid":null},"institutions":[{"id":"https://openalex.org/I87074743","display_name":"University of the Philippines Diliman","ror":"https://ror.org/03tbh6y23","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I87074743"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Edward James A. Bariring","raw_affiliation_strings":["dept. of Computer Science, University of the Philippines Diliman, Quezon city"],"affiliations":[{"raw_affiliation_string":"dept. of Computer Science, University of the Philippines Diliman, Quezon city","institution_ids":["https://openalex.org/I87074743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001429588","display_name":"Jym Paul Carandang","orcid":null},"institutions":[{"id":"https://openalex.org/I87074743","display_name":"University of the Philippines Diliman","ror":"https://ror.org/03tbh6y23","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I87074743"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Jym Paul Carandang","raw_affiliation_strings":["dept. of Computer Science, University of the Philippines Diliman, Quezon city"],"affiliations":[{"raw_affiliation_string":"dept. of Computer Science, University of the Philippines Diliman, Quezon city","institution_ids":["https://openalex.org/I87074743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049712662","display_name":"Francis George C. Cabarle","orcid":"https://orcid.org/0000-0002-5006-6310"},"institutions":[{"id":"https://openalex.org/I87074743","display_name":"University of the Philippines Diliman","ror":"https://ror.org/03tbh6y23","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I87074743"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Francis George C. Cabarle","raw_affiliation_strings":["dept. of Computer Science, University of the Philippines Diliman, Quezon city"],"affiliations":[{"raw_affiliation_string":"dept. of Computer Science, University of the Philippines Diliman, Quezon city","institution_ids":["https://openalex.org/I87074743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049545617","display_name":"Ren Tristan De La Cruz","orcid":null},"institutions":[{"id":"https://openalex.org/I87074743","display_name":"University of the Philippines Diliman","ror":"https://ror.org/03tbh6y23","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I87074743"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Ren Tristan De La Cruz","raw_affiliation_strings":["dept. of Computer Science, University of the Philippines Diliman, Quezon city"],"affiliations":[{"raw_affiliation_string":"dept. of Computer Science, University of the Philippines Diliman, Quezon city","institution_ids":["https://openalex.org/I87074743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037086358","display_name":"Henry N. Adorna","orcid":"https://orcid.org/0000-0001-5513-4039"},"institutions":[{"id":"https://openalex.org/I87074743","display_name":"University of the Philippines Diliman","ror":"https://ror.org/03tbh6y23","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I87074743"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Henry N. Adorna","raw_affiliation_strings":["dept. of Computer Science, University of the Philippines Diliman, Quezon city"],"affiliations":[{"raw_affiliation_string":"dept. of Computer Science, University of the Philippines Diliman, Quezon city","institution_ids":["https://openalex.org/I87074743"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026924081","display_name":"Miguel \u00c1ngel Mart\u00ednez del Amor","orcid":"https://orcid.org/0000-0003-1065-8802"},"institutions":[{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel Angel Martinez-del-Amor","raw_affiliation_strings":["dept. of Computer Science and A.I., Universidad de Sevilla, Seville, Spain"],"affiliations":[{"raw_affiliation_string":"dept. of Computer Science and A.I., Universidad de Sevilla, Seville, Spain","institution_ids":["https://openalex.org/I79238269"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5066150872"],"corresponding_institution_ids":["https://openalex.org/I87074743"],"apc_list":null,"apc_paid":null,"fwci":0.3436,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.60889478,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"535","last_page":"542"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11321","display_name":"Error Correcting Code Techniques","score":0.9739999771118164,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.873420000076294},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7933038473129272},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.7235147953033447},{"id":"https://openalex.org/keywords/graphics-processing-unit","display_name":"Graphics processing unit","score":0.6637080907821655},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5033335089683533},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.4559933841228485},{"id":"https://openalex.org/keywords/spiking-neural-network","display_name":"Spiking neural network","score":0.43723371624946594},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.42626073956489563},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.41696426272392273},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.35291361808776855},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.2486548125743866},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24829703569412231}],"concepts":[{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.873420000076294},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7933038473129272},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.7235147953033447},{"id":"https://openalex.org/C2779851693","wikidata":"https://www.wikidata.org/wiki/Q183484","display_name":"Graphics processing unit","level":2,"score":0.6637080907821655},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5033335089683533},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.4559933841228485},{"id":"https://openalex.org/C11731999","wikidata":"https://www.wikidata.org/wiki/Q9067355","display_name":"Spiking neural network","level":3,"score":0.43723371624946594},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.42626073956489563},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.41696426272392273},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.35291361808776855},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.2486548125743866},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24829703569412231},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/hpcs48598.2019.9188174","is_oa":false,"landing_page_url":"https://doi.org/10.1109/hpcs48598.2019.9188174","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 International Conference on High Performance Computing &amp; Simulation (HPCS)","raw_type":"proceedings-article"},{"id":"pmh:oai:idus.us.es:11441/106472","is_oa":true,"landing_page_url":"https://idus.us.es/handle//11441/106472","pdf_url":null,"source":{"id":"https://openalex.org/S4306400333","display_name":"idUS (Universidad de Sevilla)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79238269","host_organization_name":"Universidad de Sevilla","host_organization_lineage":["https://openalex.org/I79238269"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:idus.us.es:11441/106472","is_oa":true,"landing_page_url":"https://idus.us.es/handle//11441/106472","pdf_url":null,"source":{"id":"https://openalex.org/S4306400333","display_name":"idUS (Universidad de Sevilla)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79238269","host_organization_name":"Universidad de Sevilla","host_organization_lineage":["https://openalex.org/I79238269"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1227119782","https://openalex.org/W1541404518","https://openalex.org/W1543758866","https://openalex.org/W1995799881","https://openalex.org/W2034835975","https://openalex.org/W2113997157","https://openalex.org/W2336766538","https://openalex.org/W2776107563","https://openalex.org/W2909401969","https://openalex.org/W3210714477","https://openalex.org/W4253060067","https://openalex.org/W6628145964","https://openalex.org/W6649397586","https://openalex.org/W6703080837","https://openalex.org/W6803147533"],"related_works":["https://openalex.org/W1963859303","https://openalex.org/W2364044215","https://openalex.org/W2389600408","https://openalex.org/W240129890","https://openalex.org/W3048701459","https://openalex.org/W2149078538","https://openalex.org/W2080146221","https://openalex.org/W2370314112","https://openalex.org/W1912958759","https://openalex.org/W3104348697"],"abstract_inverted_index":{"Spiking":[0],"Neural":[1],"P":[2],"systems":[3,16,66,84,115],"(in":[4,34],"short,":[5,35],"SNP":[6,15,52,65,83,114],"systems)":[7],"are":[8,17,85,110],"computing":[9],"models":[10],"based":[11],"on":[12],"living":[13],"neurons.":[14],"non-deterministic":[18],"and":[19,45,101],"parallel,":[20],"hence":[21],"making":[22],"use":[23],"of":[24,73,92,99,103,142],"a":[25,30,38,89],"parallel":[26],"processor":[27],"such":[28],"as":[29],"graphics":[31],"processing":[32],"unit":[33],"GPU)":[36],"is":[37,79],"natural":[39],"candidate":[40],"for":[41,50],"simulations.":[42],"Matrix":[43],"representations":[44],"algorithms":[46],"were":[47],"previously":[48],"developed":[49],"simulating":[51,64],"systems.":[53,144],"In":[54],"this":[55],"work,":[56],"our":[57],"two":[58],"results":[59],"extend":[60],"previous":[61],"works":[62],"in":[63,67,88,97,139],"the":[68,71,75,107,124,140],"GPU:":[69],"(a)":[70],"number":[72],"neurons":[74,118],"simulator":[76,109,125],"can":[77,127],"handle":[78],"now":[80,86],"arbitrary;":[81],"(b)":[82],"represented":[87],"dense":[90,136],"instead":[91],"sparse":[93],"way.":[94],"The":[95,135],"impact":[96],"terms":[98],"time":[100],"space":[102],"these":[104],"extensions":[105],"to":[106],"GPU":[108],"analysed.":[111],"As":[112],"expected,":[113],"with":[116,132],"more":[117,120],"need":[119],"simulation":[121,141],"time,":[122],"although":[123],"performance":[126],"scale":[128],"(i.e.":[129],"perform":[130],"better)":[131],"larger":[133,143],"GPUs.":[134],"representation":[137],"helps":[138]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-10-10T00:00:00"}
