{"id":"https://openalex.org/W1584037264","doi":"https://doi.org/10.1109/hpca.2006.1598107","title":"New architectures for a new biology","display_name":"New architectures for a new biology","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W1584037264","doi":"https://doi.org/10.1109/hpca.2006.1598107","mag":"1584037264"},"language":"en","primary_location":{"id":"doi:10.1109/hpca.2006.1598107","is_oa":false,"landing_page_url":"https://doi.org/10.1109/hpca.2006.1598107","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Twelfth International Symposium on High-Performance Computer Architecture, 2006.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074305095","display_name":"David E. Shaw","orcid":"https://orcid.org/0000-0001-8265-5761"},"institutions":[{"id":"https://openalex.org/I2799548008","display_name":"D. E. Shaw Research","ror":"https://ror.org/02s04h872","country_code":"US","type":"company","lineage":["https://openalex.org/I2799548008"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"D.E. Shaw","raw_affiliation_strings":["D. E. Shaw Research and Development and Center for Computational Biology and Bioinformatics, Columbia University, USA","D. E. Shaw Res. & Dev., Columbia Univ., NY, USA"],"affiliations":[{"raw_affiliation_string":"D. E. Shaw Research and Development and Center for Computational Biology and Bioinformatics, Columbia University, USA","institution_ids":["https://openalex.org/I2799548008"]},{"raw_affiliation_string":"D. E. Shaw Res. & Dev., Columbia Univ., NY, USA","institution_ids":["https://openalex.org/I2799548008","https://openalex.org/I78577930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5074305095"],"corresponding_institution_ids":["https://openalex.org/I2799548008","https://openalex.org/I78577930"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05121311,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"4","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.7506999969482422,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.7506999969482422,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6116492748260498},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5253397822380066},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.504372239112854},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.41491299867630005},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.4119282364845276},{"id":"https://openalex.org/keywords/engineering-ethics","display_name":"Engineering ethics","score":0.4042867124080658},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.38619157671928406},{"id":"https://openalex.org/keywords/cognitive-science","display_name":"Cognitive science","score":0.34853124618530273},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.15245673060417175},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14429962635040283},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.12519147992134094},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.10641318559646606}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6116492748260498},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5253397822380066},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.504372239112854},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.41491299867630005},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.4119282364845276},{"id":"https://openalex.org/C55587333","wikidata":"https://www.wikidata.org/wiki/Q1133029","display_name":"Engineering ethics","level":1,"score":0.4042867124080658},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.38619157671928406},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.34853124618530273},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.15245673060417175},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14429962635040283},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.12519147992134094},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.10641318559646606},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/hpca.2006.1598107","is_oa":false,"landing_page_url":"https://doi.org/10.1109/hpca.2006.1598107","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Twelfth International Symposium on High-Performance Computer Architecture, 2006.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W380379685","https://openalex.org/W1536049545","https://openalex.org/W574531438","https://openalex.org/W3123265518","https://openalex.org/W1559377018","https://openalex.org/W636238771","https://openalex.org/W3125325772","https://openalex.org/W286222301","https://openalex.org/W4367833263","https://openalex.org/W2797828046"],"abstract_inverted_index":{"Summary":[0],"form":[1,45],"only":[2],"given.":[3],"Some":[4],"of":[5,14,24,28,34,40,48,65,76,81,101,112,139,164,205],"the":[6,12,29,44,63,82,98,102,109,162,186],"most":[7,91],"important":[8],"outstanding":[9],"questions":[10,83],"in":[11,104,116,169,179,185],"fields":[13],"biology,":[15],"chemistry,":[16],"and":[17,32,46,71,87,107,129,196,208],"medicine":[18],"remain":[19],"unsolved":[20],"as":[21,182],"a":[22,73,193],"result":[23],"our":[25,122],"limited":[26],"understanding":[27],"structure,":[30],"behavior":[31],"interaction":[33],"biologically":[35],"significant":[36],"molecules.":[37],"The":[38],"laws":[39,67],"physics":[41],"that":[42,84],"determine":[43],"function":[47],"these":[49,66],"biomolecules":[50],"are":[51,90],"well":[52],"understood.":[53],"Current":[54],"technology,":[55],"however,":[56],"does":[57],"not":[58],"allow":[59],"us":[60],"to":[61,78,93,125,131,188,197],"simulate":[62],"effect":[64],"with":[68,145],"sufficient":[69,74],"accuracy,":[70],"for":[72],"period":[75],"time,":[77],"answer":[79],"many":[80],"biologists,":[85],"biochemists,":[86],"biomedical":[88],"researchers":[89,149],"anxious":[92],"answer.":[94],"This":[95],"talk":[96],"describes":[97],"current":[99,118],"state":[100],"art":[103],"biomolecular":[105],"simulation":[106],"explores":[108],"potential":[110],"role":[111],"high-performance":[113],"computing":[114],"technologies":[115],"extending":[117],"capabilities.":[119],"Efforts":[120],"within":[121],"own":[123],"lab":[124],"develop":[126,198],"novel":[127],"architectures":[128],"algorithms":[130],"accelerate":[132],"molecular":[133,194],"dynamics":[134],"simulations":[135],"by":[136,147],"several":[137],"orders":[138],"magnitude":[140],"would":[141],"be":[142],"described,":[143],"along":[144],"work":[146],"other":[148],"pursuing":[150],"alternative":[151],"approaches.":[152],"If":[153],"such":[154],"efforts":[155],"ultimately":[156],"prove":[157],"successful,":[158],"one":[159],"might":[160],"imagine":[161],"emergence":[163],"an":[165],"entirely":[166],"new":[167],"paradigm":[168],"which":[170],"computational":[171],"experiments":[172],"take":[173],"their":[174],"place":[175],"alongside":[176],"those":[177],"conducted":[178],"\"wet\"":[180],"laboratories":[181],"central":[183],"tools":[184],"quest":[187],"understand":[189],"living":[190],"organisms":[191],"at":[192],"level,":[195],"safe,":[199],"effective,":[200],"precisely":[201],"targeted":[202],"medicines":[203],"capable":[204],"relieving":[206],"suffering":[207],"saving":[209],"human":[210],"lives.":[211]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
