{"id":"https://openalex.org/W2074361356","doi":"https://doi.org/10.1109/grc.2012.6468607","title":"A rapid 3D protein Structural Classification using Pseudo 2D HMMs","display_name":"A rapid 3D protein Structural Classification using Pseudo 2D HMMs","publication_year":2012,"publication_date":"2012-08-01","ids":{"openalex":"https://openalex.org/W2074361356","doi":"https://doi.org/10.1109/grc.2012.6468607","mag":"2074361356"},"language":"en","primary_location":{"id":"doi:10.1109/grc.2012.6468607","is_oa":false,"landing_page_url":"https://doi.org/10.1109/grc.2012.6468607","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Granular Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100423945","display_name":"Hui Li","orcid":"https://orcid.org/0000-0003-0551-9912"},"institutions":[{"id":"https://openalex.org/I137853757","display_name":"Howard University","ror":"https://ror.org/05gt1vc06","country_code":"US","type":"education","lineage":["https://openalex.org/I137853757"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hui Li","raw_affiliation_strings":["Department of Systems and Computer Science, Howard University, Washington, DC, DC, USA","Dept. of Systems and Computer Science, Howard University, Washington, DC 20059, USA"],"affiliations":[{"raw_affiliation_string":"Department of Systems and Computer Science, Howard University, Washington, DC, DC, USA","institution_ids":["https://openalex.org/I137853757"]},{"raw_affiliation_string":"Dept. of Systems and Computer Science, Howard University, Washington, DC 20059, USA","institution_ids":["https://openalex.org/I137853757"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048024448","display_name":"Jean-Claude Tounkara","orcid":null},"institutions":[{"id":"https://openalex.org/I137853757","display_name":"Howard University","ror":"https://ror.org/05gt1vc06","country_code":"US","type":"education","lineage":["https://openalex.org/I137853757"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jean-Claude Tounkara","raw_affiliation_strings":["Department of Systems and Computer Science, Howard University, Washington, DC, DC, USA","Dept. of Systems and Computer Science, Howard University, Washington, DC 20059, USA"],"affiliations":[{"raw_affiliation_string":"Department of Systems and Computer Science, Howard University, Washington, DC, DC, USA","institution_ids":["https://openalex.org/I137853757"]},{"raw_affiliation_string":"Dept. of Systems and Computer Science, Howard University, Washington, DC 20059, USA","institution_ids":["https://openalex.org/I137853757"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068264136","display_name":"Legand Burge","orcid":"https://orcid.org/0009-0000-9876-7135"},"institutions":[{"id":"https://openalex.org/I137853757","display_name":"Howard University","ror":"https://ror.org/05gt1vc06","country_code":"US","type":"education","lineage":["https://openalex.org/I137853757"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Legand Burge","raw_affiliation_strings":["Department of Systems and Computer Science, Howard University, Washington, DC, DC, USA","Dept. of Systems and Computer Science, Howard University, Washington, DC 20059, USA"],"affiliations":[{"raw_affiliation_string":"Department of Systems and Computer Science, Howard University, Washington, DC, DC, USA","institution_ids":["https://openalex.org/I137853757"]},{"raw_affiliation_string":"Dept. of Systems and Computer Science, Howard University, Washington, DC 20059, USA","institution_ids":["https://openalex.org/I137853757"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5115590267","display_name":"Chunmei Liu","orcid":"https://orcid.org/0000-0001-9560-3709"},"institutions":[{"id":"https://openalex.org/I137853757","display_name":"Howard University","ror":"https://ror.org/05gt1vc06","country_code":"US","type":"education","lineage":["https://openalex.org/I137853757"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chunmei Liu","raw_affiliation_strings":["Department of Systems and Computer Science, Howard University, Washington, DC, DC, USA","Dept. of Systems and Computer Science, Howard University, Washington, DC 20059, USA"],"affiliations":[{"raw_affiliation_string":"Department of Systems and Computer Science, Howard University, Washington, DC, DC, USA","institution_ids":["https://openalex.org/I137853757"]},{"raw_affiliation_string":"Dept. of Systems and Computer Science, Howard University, Washington, DC 20059, USA","institution_ids":["https://openalex.org/I137853757"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100423945"],"corresponding_institution_ids":["https://openalex.org/I137853757"],"apc_list":null,"apc_paid":null,"fwci":0.1313,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.51728702,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"742","last_page":"745"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.7183442115783691},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7125914692878723},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.7043974995613098},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5953448414802551},{"id":"https://openalex.org/keywords/feature-vector","display_name":"Feature vector","score":0.4869440793991089},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4550333023071289},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32072657346725464}],"concepts":[{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.7183442115783691},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7125914692878723},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.7043974995613098},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5953448414802551},{"id":"https://openalex.org/C83665646","wikidata":"https://www.wikidata.org/wiki/Q42139305","display_name":"Feature vector","level":2,"score":0.4869440793991089},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4550333023071289},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32072657346725464},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/grc.2012.6468607","is_oa":false,"landing_page_url":"https://doi.org/10.1109/grc.2012.6468607","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE International Conference on Granular Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W188368460","https://openalex.org/W1981722221","https://openalex.org/W1983501050","https://openalex.org/W1984804689","https://openalex.org/W2011334977","https://openalex.org/W2020940951","https://openalex.org/W2021953523","https://openalex.org/W2030517878","https://openalex.org/W2081897966","https://openalex.org/W2098770192","https://openalex.org/W2109109045","https://openalex.org/W2124241917","https://openalex.org/W2124437018","https://openalex.org/W2126232612","https://openalex.org/W2128653811","https://openalex.org/W2141262001","https://openalex.org/W2146300966","https://openalex.org/W2160763205","https://openalex.org/W2169712481","https://openalex.org/W2170672962","https://openalex.org/W3006507030","https://openalex.org/W6632844911","https://openalex.org/W6681659067"],"related_works":["https://openalex.org/W2053269318","https://openalex.org/W3216148648","https://openalex.org/W2048716124","https://openalex.org/W2121195913","https://openalex.org/W2944661354","https://openalex.org/W2368871293","https://openalex.org/W2353313924","https://openalex.org/W4246948366","https://openalex.org/W2388668038","https://openalex.org/W2607673196"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3,21,68,85],"introduce":[4],"a":[5,46,50,56,70,101],"rapid":[6],"method":[7],"to":[8,62,90,104],"classify":[9,63],"protein":[10,30,65,72],"structures.":[11,66],"Instead":[12],"of":[13,18,79],"using":[14],"the":[15,28,37,43,64,77,80,87,91],"3D":[16,29],"structures":[17,31],"proteins":[19],"directly,":[20],"used":[22],"2D":[23,38,57,81],"inner-distance":[24,39],"matrices":[25,44],"converted":[26],"from":[27,36,75],"and":[32,49],"extracted":[33],"feature":[34],"vectors":[35],"matrices.":[40,83],"We":[41,53],"divided":[42],"into":[45],"training":[47,76],"dataset":[48,78],"testing":[51,92],"dataset.":[52,93],"then":[54],"employed":[55],"Hidden":[58],"Markov":[59],"Model":[60],"(2DHMM)":[61],"First,":[67],"obtained":[69],"2DHMM":[71,88],"structure":[73],"template":[74,89],"innerdistance":[82],"Second,":[84],"applied":[86],"The":[94],"results":[95],"show":[96],"that":[97],"our":[98],"approach":[99],"obtains":[100],"competitive":[102],"performance":[103],"other":[105],"approaches.":[106]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
