{"id":"https://openalex.org/W2143292574","doi":"https://doi.org/10.1109/gpc.2009.14","title":"Web-Based Authoring and Secure Enactment of Bioinformatics Workflows","display_name":"Web-Based Authoring and Secure Enactment of Bioinformatics Workflows","publication_year":2009,"publication_date":"2009-05-01","ids":{"openalex":"https://openalex.org/W2143292574","doi":"https://doi.org/10.1109/gpc.2009.14","mag":"2143292574"},"language":"en","primary_location":{"id":"doi:10.1109/gpc.2009.14","is_oa":false,"landing_page_url":"https://doi.org/10.1109/gpc.2009.14","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 Workshops at the Grid and Pervasive Computing Conference","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012956979","display_name":"Stelios Sfakianakis","orcid":"https://orcid.org/0000-0001-8424-4157"},"institutions":[{"id":"https://openalex.org/I4210127348","display_name":"FORTH Institute of Electronic Structure and Laser","ror":"https://ror.org/02a3mhk13","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210127348","https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Stelios Sfakianakis","raw_affiliation_strings":["Biomedical Informatics Laboratory, Institute of Computer Science, FORTH, Heraklion, Greece","Biomed. Inf. Lab., Inst. of Comput. Sci., Heraklion"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Laboratory, Institute of Computer Science, FORTH, Heraklion, Greece","institution_ids":["https://openalex.org/I4210127348"]},{"raw_affiliation_string":"Biomed. Inf. Lab., Inst. of Comput. Sci., Heraklion","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024944038","display_name":"Lefteris Koumakis","orcid":"https://orcid.org/0000-0002-8442-4630"},"institutions":[{"id":"https://openalex.org/I4210127348","display_name":"FORTH Institute of Electronic Structure and Laser","ror":"https://ror.org/02a3mhk13","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210127348","https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Lefteris Koumakis","raw_affiliation_strings":["Biomedical Informatics Laboratory, Institute of Computer Science, FORTH, Heraklion, Greece","Biomed. Inf. Lab., Inst. of Comput. Sci., Heraklion"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Laboratory, Institute of Computer Science, FORTH, Heraklion, Greece","institution_ids":["https://openalex.org/I4210127348"]},{"raw_affiliation_string":"Biomed. Inf. Lab., Inst. of Comput. Sci., Heraklion","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037012227","display_name":"George Zacharioudakis","orcid":"https://orcid.org/0000-0001-9086-749X"},"institutions":[{"id":"https://openalex.org/I4210127348","display_name":"FORTH Institute of Electronic Structure and Laser","ror":"https://ror.org/02a3mhk13","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210127348","https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"George Zacharioudakis","raw_affiliation_strings":["Biomedical Informatics Laboratory, Institute of Computer Science, FORTH, Heraklion, Greece","Biomed. Inf. Lab., Inst. of Comput. Sci., Heraklion"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Laboratory, Institute of Computer Science, FORTH, Heraklion, Greece","institution_ids":["https://openalex.org/I4210127348"]},{"raw_affiliation_string":"Biomed. Inf. Lab., Inst. of Comput. Sci., Heraklion","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087123353","display_name":"Manolis Tsiknakis","orcid":"https://orcid.org/0000-0001-8454-1450"},"institutions":[{"id":"https://openalex.org/I4210127348","display_name":"FORTH Institute of Electronic Structure and Laser","ror":"https://ror.org/02a3mhk13","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210127348","https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Manolis Tsiknakis","raw_affiliation_strings":["Biomedical Informatics Laboratory, Institute of Computer Science, FORTH, Heraklion, Greece","Biomed. Inf. Lab., Inst. of Comput. Sci., Heraklion"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Laboratory, Institute of Computer Science, FORTH, Heraklion, Greece","institution_ids":["https://openalex.org/I4210127348"]},{"raw_affiliation_string":"Biomed. Inf. Lab., Inst. of Comput. Sci., Heraklion","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5012956979"],"corresponding_institution_ids":["https://openalex.org/I4210127348"],"apc_list":null,"apc_paid":null,"fwci":5.9755,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.95774817,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"4967","issue":null,"first_page":"88","last_page":"95"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9764999747276306,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8809875845909119},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8220841884613037},{"id":"https://openalex.org/keywords/workflow-technology","display_name":"Workflow technology","score":0.6071362495422363},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.5462105870246887},{"id":"https://openalex.org/keywords/workflow-engine","display_name":"Workflow engine","score":0.5460758805274963},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5251103043556213},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.46961480379104614},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4613265097141266},{"id":"https://openalex.org/keywords/windows-workflow-foundation","display_name":"Windows Workflow Foundation","score":0.4533859193325043},{"id":"https://openalex.org/keywords/business-process-execution-language","display_name":"Business Process Execution Language","score":0.45197319984436035},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.4338444471359253},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4266423285007477},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.39644235372543335},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32553184032440186},{"id":"https://openalex.org/keywords/service-oriented-architecture","display_name":"Service-oriented architecture","score":0.2022515833377838}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8809875845909119},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8220841884613037},{"id":"https://openalex.org/C19612761","wikidata":"https://www.wikidata.org/wiki/Q8034836","display_name":"Workflow technology","level":3,"score":0.6071362495422363},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.5462105870246887},{"id":"https://openalex.org/C188220564","wikidata":"https://www.wikidata.org/wiki/Q3325097","display_name":"Workflow engine","level":3,"score":0.5460758805274963},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5251103043556213},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.46961480379104614},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4613265097141266},{"id":"https://openalex.org/C163888707","wikidata":"https://www.wikidata.org/wiki/Q1154450","display_name":"Windows Workflow Foundation","level":4,"score":0.4533859193325043},{"id":"https://openalex.org/C4927394","wikidata":"https://www.wikidata.org/wiki/Q787631","display_name":"Business Process Execution Language","level":4,"score":0.45197319984436035},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.4338444471359253},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4266423285007477},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.39644235372543335},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32553184032440186},{"id":"https://openalex.org/C57041688","wikidata":"https://www.wikidata.org/wiki/Q220644","display_name":"Service-oriented architecture","level":3,"score":0.2022515833377838},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/gpc.2009.14","is_oa":false,"landing_page_url":"https://doi.org/10.1109/gpc.2009.14","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 Workshops at the Grid and Pervasive Computing Conference","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4000000059604645,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306217","display_name":"Alliance for Cancer Gene Therapy","ror":"https://ror.org/00mms0j12"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W129198431","https://openalex.org/W1480333175","https://openalex.org/W1814568923","https://openalex.org/W1996902131","https://openalex.org/W2008865625","https://openalex.org/W2025577327","https://openalex.org/W2031999958","https://openalex.org/W2040671495","https://openalex.org/W2054407923","https://openalex.org/W2059471034","https://openalex.org/W2061234822","https://openalex.org/W2086438380","https://openalex.org/W2095014393","https://openalex.org/W2102391979","https://openalex.org/W2118252041","https://openalex.org/W2118773362","https://openalex.org/W2123663722","https://openalex.org/W2125545184","https://openalex.org/W2133884536","https://openalex.org/W2142110984","https://openalex.org/W2146455150","https://openalex.org/W2153074919","https://openalex.org/W2155710049","https://openalex.org/W2160950721","https://openalex.org/W2161066864","https://openalex.org/W2163040665","https://openalex.org/W2164806428","https://openalex.org/W2170419021","https://openalex.org/W2172143128","https://openalex.org/W2311287658","https://openalex.org/W2913037692","https://openalex.org/W4252427272","https://openalex.org/W6678142533","https://openalex.org/W6698503778"],"related_works":["https://openalex.org/W2373541195","https://openalex.org/W2376410910","https://openalex.org/W2091596831","https://openalex.org/W2166163080","https://openalex.org/W291310304","https://openalex.org/W2374818432","https://openalex.org/W2365658322","https://openalex.org/W2379425324","https://openalex.org/W329008868","https://openalex.org/W2374323547"],"abstract_inverted_index":{"The":[0,77,99],"recent":[1],"advances":[2],"in":[3,13,34,113,124],"the":[4,14,35,71,114,119,125],"field":[5,115],"of":[6,11,21,37,74,80,116,121],"bioinformatics":[7,60,117],"present":[8,58],"a":[9,59,84,94],"number":[10],"challenges":[12],"secure":[15],"and":[16,19,31,42,51,63,93,101,128,133],"efficient":[17],"management":[18],"analysis":[20,52],"biological":[22],"data":[23,41,49,109],"resources.":[24],"Workflow":[25],"technologies":[26],"aim":[27],"to":[28,68,88],"assist":[29],"scientists":[30],"domain":[32],"experts":[33],"design":[36,132],"complex,":[38],"long":[39],"running,":[40],"computing":[43],"intensive":[44],"experiments":[45],"that":[46,66,110],"involve":[47],"many":[48],"processing":[50],"tasks.":[53],"In":[54],"this":[55,81],"paper":[56],"we":[57,129],"workflow":[61,91,126],"authoring":[62],"execution":[64,97,127],"environment":[65],"intends":[67],"greatly":[69],"facilitate":[70],"whole":[72],"lifecycle":[73],"such":[75],"experiments.":[76],"main":[78],"contributions":[79],"work":[82],"are":[83,111],"Web":[85],"based,":[86],"easy":[87],"use,":[89],"graphical":[90],"designer":[92],"BPEL":[95],"compliant":[96],"environment.":[98],"ethical":[100],"security":[102,138],"requirements":[103],"when":[104],"dealing":[105],"with":[106,140],"sensitive":[107],"personal":[108],"inherent":[112],"impose":[118],"introduction":[120],"ldquocredentials":[122],"delegationrdquo":[123],"describe":[130],"its":[131],"implementation":[134],"through":[135],"bridging":[136],"Grid":[137],"mechanisms":[139],"business":[141],"workflows":[142],"technologies.":[143]},"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
