{"id":"https://openalex.org/W2031162488","doi":"https://doi.org/10.1109/globalsip.2014.7032350","title":"Differential analysis of RNA methylome with improved spatial resolution","display_name":"Differential analysis of RNA methylome with improved spatial resolution","publication_year":2014,"publication_date":"2014-12-01","ids":{"openalex":"https://openalex.org/W2031162488","doi":"https://doi.org/10.1109/globalsip.2014.7032350","mag":"2031162488"},"language":"en","primary_location":{"id":"doi:10.1109/globalsip.2014.7032350","is_oa":false,"landing_page_url":"https://doi.org/10.1109/globalsip.2014.7032350","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100424330","display_name":"Yuchen Zhang","orcid":"https://orcid.org/0000-0003-4602-5791"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I27599042","display_name":"Xi'an Polytechnic University","ror":"https://ror.org/03442p831","country_code":"CN","type":"education","lineage":["https://openalex.org/I27599042"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu-Chen Zhang","raw_affiliation_strings":["Xi'an Polytechnic University, Xi'an, Shaanxi, CN","Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi\u2019an, 710072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xi'an Polytechnic University, Xi'an, Shaanxi, CN","institution_ids":["https://openalex.org/I27599042"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi\u2019an, 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061712236","display_name":"Shao\u2010Wu Zhang","orcid":"https://orcid.org/0000-0003-1305-7447"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I27599042","display_name":"Xi'an Polytechnic University","ror":"https://ror.org/03442p831","country_code":"CN","type":"education","lineage":["https://openalex.org/I27599042"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shao-Wu Zhang","raw_affiliation_strings":["Xi'an Polytechnic University, Xi'an, Shaanxi, CN","Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi\u2019an, 710072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xi'an Polytechnic University, Xi'an, Shaanxi, CN","institution_ids":["https://openalex.org/I27599042"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi\u2019an, 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088911520","display_name":"Lian Liu","orcid":"https://orcid.org/0000-0001-5868-4482"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I27599042","display_name":"Xi'an Polytechnic University","ror":"https://ror.org/03442p831","country_code":"CN","type":"education","lineage":["https://openalex.org/I27599042"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lian Liu","raw_affiliation_strings":["Xi'an Polytechnic University, Xi'an, Shaanxi, CN","Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi\u2019an, 710072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xi'an Polytechnic University, Xi'an, Shaanxi, CN","institution_ids":["https://openalex.org/I27599042"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi\u2019an, 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100351875","display_name":"Lin Zhang","orcid":"https://orcid.org/0000-0002-7404-5231"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Zhang","raw_affiliation_strings":["China University of Mining and Technology, Xuzhou, Jiangsu, CN","Siee, China University of Mining and Technology, Xuzhou, 221116, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China University of Mining and Technology, Xuzhou, Jiangsu, CN","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"Siee, China University of Mining and Technology, Xuzhou, 221116, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113566766","display_name":"Hui Liu","orcid":"https://orcid.org/0000-0001-8845-4813"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Liu","raw_affiliation_strings":["China University of Mining and Technology, Xuzhou, Jiangsu, CN","Siee, China University of Mining and Technology, Xuzhou, 221116, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China University of Mining and Technology, Xuzhou, Jiangsu, CN","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"Siee, China University of Mining and Technology, Xuzhou, 221116, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089852582","display_name":"Xiaodong Cui","orcid":"https://orcid.org/0000-0002-2280-4160"},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaodong Cui","raw_affiliation_strings":["University of Texas at San Antonio, San Antonio, TX, US","Department of ECE, The University of Texas at San Antonio, San Antonio, TX 78249, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Texas at San Antonio, San Antonio, TX, US","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Department of ECE, The University of Texas at San Antonio, San Antonio, TX 78249, USA","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068887242","display_name":"Yufei Huang","orcid":"https://orcid.org/0000-0001-6268-5357"},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yufei Huang","raw_affiliation_strings":["University of Texas at San Antonio, San Antonio, TX, US","Department of ECE, The University of Texas at San Antonio, San Antonio, TX 78249, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Texas at San Antonio, San Antonio, TX, US","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Department of ECE, The University of Texas at San Antonio, San Antonio, TX 78249, USA","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062986831","display_name":"Jia Meng","orcid":"https://orcid.org/0000-0003-3455-205X"},"institutions":[{"id":"https://openalex.org/I69356397","display_name":"Xi\u2019an Jiaotong-Liverpool University","ror":"https://ror.org/03zmrmn05","country_code":"CN","type":"education","lineage":["https://openalex.org/I69356397"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jia Meng","raw_affiliation_strings":["Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu, CN","Department of Biological Sciences, Xi'an Jiaotong-Liverpool University, Suzhou 215123, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu, CN","institution_ids":["https://openalex.org/I69356397"]},{"raw_affiliation_string":"Department of Biological Sciences, Xi'an Jiaotong-Liverpool University, Suzhou 215123, China","institution_ids":["https://openalex.org/I69356397"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"485","issue":null,"first_page":"1372","last_page":"1375"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5482039451599121},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.44222408533096313},{"id":"https://openalex.org/keywords/differential","display_name":"Differential (mechanical device)","score":0.4318872094154358},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3666127920150757},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2042219042778015},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18645963072776794},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1705152690410614}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5482039451599121},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.44222408533096313},{"id":"https://openalex.org/C93226319","wikidata":"https://www.wikidata.org/wiki/Q193137","display_name":"Differential (mechanical device)","level":2,"score":0.4318872094154358},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3666127920150757},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2042219042778015},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18645963072776794},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1705152690410614},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/globalsip.2014.7032350","is_oa":false,"landing_page_url":"https://doi.org/10.1109/globalsip.2014.7032350","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309475","display_name":"Northwestern University","ror":"https://ror.org/000e0be47"},{"id":"https://openalex.org/F4320310677","display_name":"University of Texas at San Antonio","ror":"https://ror.org/01kd65564"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321392","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320337534","display_name":"National Institute on Minority Health and Health Disparities","ror":"https://ror.org/0493hgw16"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1963487661","https://openalex.org/W1963590871","https://openalex.org/W1974225991","https://openalex.org/W2011131953","https://openalex.org/W2017198614","https://openalex.org/W2018584324","https://openalex.org/W2019229253","https://openalex.org/W2026264107","https://openalex.org/W2044676948","https://openalex.org/W2049633694","https://openalex.org/W2059099579","https://openalex.org/W2065847836","https://openalex.org/W2078964320","https://openalex.org/W2113588666","https://openalex.org/W2141899961","https://openalex.org/W2166153887"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"Recent":[0],"development":[1],"of":[2,9,110],"MeRIP-Seq":[3,43,55],"enabled":[4],"the":[5,21,30,77,108],"global":[6],"unbiased":[7],"profiling":[8],"transcriptome-wide":[10],"N6-Adenosine.":[11],"With":[12],"this":[13,89],"technique,":[14],"it":[15,135],"is":[16,82,136,157],"now":[17],"possible":[18,137],"to":[19,138],"detect":[20,139],"RNA":[22,65,79],"methylation":[23,32,51,80,112,141],"sites":[24,33,142],"under":[25],"a":[26,62,85,93],"specific":[27],"condition":[28],"or":[29,61],"differential":[31,73,111,140],"between":[34],"two":[35],"experimental":[36],"conditions.":[37],"However,":[38],"as":[39,84,152,160],"an":[40,161],"affinity-based":[41,148],"approach,":[42],"has":[44],"yet":[45],"provided":[46],"base-pair":[47],"resolution.":[48,118],"A":[49],"single":[50,86],"site":[52,81],"reported":[53],"by":[54,71],"data":[56,126],"may":[57],"actually":[58],"contain":[59],"one":[60],"few":[63],"methylated":[64],"residuals,":[66],"which":[67],"cannot":[68],"be":[69],"differentiated":[70],"existing":[72],"analysis":[74],"methods":[75],"when":[76],"entire":[78],"treated":[83],"feature.":[87],"Within":[88],"paper,":[90],"we":[91],"propose":[92],"new":[94],"approach":[95,150],"\u2018RHHMM\u2019":[96],"that":[97],"combines":[98],"Fisher's":[99],"exact":[100],"test":[101],"and":[102,124],"hidden":[103],"Markov":[104],"model":[105],"(HMM)":[106],"for":[107],"detection":[109],"regions":[113],"(DMRs)":[114],"with":[115,129,143],"improved":[116,144],"spatial":[117,133,145],"The":[119,154],"results":[120],"on":[121,147],"both":[122],"simulated":[123],"real":[125],"demonstrated":[127],"that,":[128],"HMM":[130],"incorporating":[131],"local":[132],"dependency,":[134],"resolution":[146],"sequencing":[149],"such":[151],"MeRIP-Seq.":[153],"proposed":[155],"method":[156],"freely":[158],"available":[159],"open":[162],"source":[163],"R":[164],"package.":[165]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
