{"id":"https://openalex.org/W1973871798","doi":"https://doi.org/10.1109/globalsip.2014.7032342","title":"De novo transcriptome assemblies and annotation for pacifie whiteleg shrimp","display_name":"De novo transcriptome assemblies and annotation for pacifie whiteleg shrimp","publication_year":2014,"publication_date":"2014-12-01","ids":{"openalex":"https://openalex.org/W1973871798","doi":"https://doi.org/10.1109/globalsip.2014.7032342","mag":"1973871798"},"language":"en","primary_location":{"id":"doi:10.1109/globalsip.2014.7032342","is_oa":false,"landing_page_url":"https://doi.org/10.1109/globalsip.2014.7032342","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088517574","display_name":"Noushin Ghaffari","orcid":"https://orcid.org/0000-0001-5354-5643"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Noushin Ghaffari","raw_affiliation_strings":["AgriLife Genomics and Bioinformatics, Texas A&M AgriLife Research"],"affiliations":[{"raw_affiliation_string":"AgriLife Genomics and Bioinformatics, Texas A&M AgriLife Research","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062394853","display_name":"Osama A. Arshad","orcid":null},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Osama A. Arshad","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Texas A&M University","Department of Electrical and Computer Engineering,Texas A&M University"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering,Texas A&M University","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080014317","display_name":"Hyundoo Jeong","orcid":"https://orcid.org/0000-0002-5641-8620"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hyundoo Jeong","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Texas A&M University","Department of Electrical and Computer Engineering,Texas A&M University"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering,Texas A&M University","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062258810","display_name":"John Thiltges","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"John Thiltges","raw_affiliation_strings":["AgriLife Genomics and Bioinformatics, Texas A&M AgriLife Research"],"affiliations":[{"raw_affiliation_string":"AgriLife Genomics and Bioinformatics, Texas A&M AgriLife Research","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091727400","display_name":"Michael F. Criscitiello","orcid":"https://orcid.org/0000-0003-4262-7832"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael F. Criscitiello","raw_affiliation_strings":["Departments of Veterinary Pathobiology, Texas A&M University","Departments of Veterinary Pathobiology and Microbial Pathogenesis and Immunology, Texas A&M University"],"affiliations":[{"raw_affiliation_string":"Departments of Veterinary Pathobiology, Texas A&M University","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Departments of Veterinary Pathobiology and Microbial Pathogenesis and Immunology, Texas A&M University","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081620315","display_name":"Byung-Jun Yoon","orcid":"https://orcid.org/0000-0001-9328-1101"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Byung-Jun Yoon","raw_affiliation_strings":["Departments of Veterinary Pathobiology, Texas A&M University","Department of Electrical and Computer Engineering,Texas A&M University"],"affiliations":[{"raw_affiliation_string":"Departments of Veterinary Pathobiology, Texas A&M University","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering,Texas A&M University","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045462352","display_name":"Aniruddha Datta","orcid":"https://orcid.org/0000-0003-1213-3807"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aniruddha Datta","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Texas A&M University","Department of Electrical and Computer Engineering,Texas A&M University"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering,Texas A&M University","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055316781","display_name":"Charles D. Johnson","orcid":"https://orcid.org/0000-0003-3892-7082"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Charles D. Johnson","raw_affiliation_strings":["AgriLife Genomics and Bioinformatics, Texas A&M AgriLife Research"],"affiliations":[{"raw_affiliation_string":"AgriLife Genomics and Bioinformatics, Texas A&M AgriLife Research","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5088517574"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05319749,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1342","last_page":"1343"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9641000032424927,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.8373663425445557},{"id":"https://openalex.org/keywords/litopenaeus","display_name":"Litopenaeus","score":0.7216652631759644},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6827497482299805},{"id":"https://openalex.org/keywords/penaeidae","display_name":"Penaeidae","score":0.5566773414611816},{"id":"https://openalex.org/keywords/shrimp","display_name":"Shrimp","score":0.4750366508960724},{"id":"https://openalex.org/keywords/mariculture","display_name":"Mariculture","score":0.4708927273750305},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4270566999912262},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.267913281917572},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2242310643196106},{"id":"https://openalex.org/keywords/fish-actinopterygii","display_name":"Fish <Actinopterygii>","score":0.19731801748275757},{"id":"https://openalex.org/keywords/fishery","display_name":"Fishery","score":0.1911529004573822},{"id":"https://openalex.org/keywords/aquaculture","display_name":"Aquaculture","score":0.0908612608909607},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.06595075130462646},{"id":"https://openalex.org/keywords/crustacean","display_name":"Crustacean","score":0.06275460124015808}],"concepts":[{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.8373663425445557},{"id":"https://openalex.org/C2777013287","wikidata":"https://www.wikidata.org/wiki/Q3007441","display_name":"Litopenaeus","level":3,"score":0.7216652631759644},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6827497482299805},{"id":"https://openalex.org/C2776911630","wikidata":"https://www.wikidata.org/wiki/Q683918","display_name":"Penaeidae","level":4,"score":0.5566773414611816},{"id":"https://openalex.org/C2776841996","wikidata":"https://www.wikidata.org/wiki/Q1517781","display_name":"Shrimp","level":2,"score":0.4750366508960724},{"id":"https://openalex.org/C14429324","wikidata":"https://www.wikidata.org/wiki/Q1191982","display_name":"Mariculture","level":4,"score":0.4708927273750305},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4270566999912262},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.267913281917572},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2242310643196106},{"id":"https://openalex.org/C2909208804","wikidata":"https://www.wikidata.org/wiki/Q127282","display_name":"Fish <Actinopterygii>","level":2,"score":0.19731801748275757},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.1911529004573822},{"id":"https://openalex.org/C86909935","wikidata":"https://www.wikidata.org/wiki/Q188989","display_name":"Aquaculture","level":3,"score":0.0908612608909607},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06595075130462646},{"id":"https://openalex.org/C84766238","wikidata":"https://www.wikidata.org/wiki/Q25364","display_name":"Crustacean","level":2,"score":0.06275460124015808},{"id":"https://openalex.org/C2779770362","wikidata":"https://www.wikidata.org/wiki/Q4610","display_name":"Decapoda","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/globalsip.2014.7032342","is_oa":false,"landing_page_url":"https://doi.org/10.1109/globalsip.2014.7032342","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","display_name":"Life below water","score":0.75}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1971899779","https://openalex.org/W2101786683","https://openalex.org/W2103148772","https://openalex.org/W2109636763","https://openalex.org/W2110392562","https://openalex.org/W2112888168","https://openalex.org/W2126419817","https://openalex.org/W2130165325","https://openalex.org/W2152556446"],"related_works":["https://openalex.org/W2770172812","https://openalex.org/W2093045691","https://openalex.org/W4390562976","https://openalex.org/W2355282155","https://openalex.org/W1498447266","https://openalex.org/W3148703840","https://openalex.org/W4251082108","https://openalex.org/W4214642348","https://openalex.org/W2945158084","https://openalex.org/W2064556025"],"abstract_inverted_index":{"Transcriptome":[0],"assembly":[1],"techniques":[2],"provide":[3],"a":[4,23],"valuable":[5],"opportunity":[6],"to":[7],"learn":[8],"more":[9],"about":[10],"non-model":[11],"organisms.":[12],"We":[13,38],"present":[14],"transcriptome":[15,34,44],"assemblies":[16,45],"for":[17],"Pacific":[18,42],"whiteleg":[19,43],"shrimp":[20],"(Litopenaeus":[21],"vannamei),":[22],"species":[24],"of":[25],"great":[26],"importance":[27],"in":[28],"global":[29],"mariculture,":[30],"that":[31],"lacks":[32],"solid":[33],"and":[35,49],"genome":[36],"references.":[37],"examine":[39],"the":[40,51],"new":[41],"via":[46],"multiple":[47],"metrics,":[48],"compare":[50],"result":[52],"with":[53],"annotated":[54],"similar":[55],"species.":[56]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}