{"id":"https://openalex.org/W2547013679","doi":"https://doi.org/10.1109/globalsip.2013.6736809","title":"Cloud processing of 1000 genomes sequencing data using Amazon Web Service","display_name":"Cloud processing of 1000 genomes sequencing data using Amazon Web Service","publication_year":2013,"publication_date":"2013-12-01","ids":{"openalex":"https://openalex.org/W2547013679","doi":"https://doi.org/10.1109/globalsip.2013.6736809","mag":"2547013679"},"language":"en","primary_location":{"id":"doi:10.1109/globalsip.2013.6736809","is_oa":false,"landing_page_url":"https://doi.org/10.1109/globalsip.2013.6736809","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE Global Conference on Signal and Information Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049887912","display_name":"Zhuoyi Huang","orcid":"https://orcid.org/0000-0001-9149-295X"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210162370","display_name":"Baylor Genetics","ror":"https://ror.org/05bxjx840","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210162370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhuoyi Huang","raw_affiliation_strings":["Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA","institution_ids":["https://openalex.org/I4210162370","https://openalex.org/I181547552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100766067","display_name":"Jin Yu","orcid":"https://orcid.org/0000-0002-2990-6602"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210162370","display_name":"Baylor Genetics","ror":"https://ror.org/05bxjx840","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210162370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jin Yu","raw_affiliation_strings":["Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA","institution_ids":["https://openalex.org/I4210162370","https://openalex.org/I181547552"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108379172","display_name":"Fuli Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I4210162370","display_name":"Baylor Genetics","ror":"https://ror.org/05bxjx840","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210162370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fuli Yu","raw_affiliation_strings":["Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA","institution_ids":["https://openalex.org/I4210162370","https://openalex.org/I181547552"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2992,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.63888256,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"49","last_page":"52"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9646999835968018,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9567000269889832,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.8417187929153442},{"id":"https://openalex.org/keywords/amazon-rainforest","display_name":"Amazon rainforest","score":0.7664551734924316},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7291146516799927},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5582493543624878},{"id":"https://openalex.org/keywords/imputation","display_name":"Imputation (statistics)","score":0.5087445378303528},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.4962385296821594},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.42473727464675903},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37039706110954285},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.23046818375587463},{"id":"https://openalex.org/keywords/missing-data","display_name":"Missing data","score":0.19508519768714905},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.17050600051879883},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16053178906440735}],"concepts":[{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.8417187929153442},{"id":"https://openalex.org/C535291247","wikidata":"https://www.wikidata.org/wiki/Q177567","display_name":"Amazon rainforest","level":2,"score":0.7664551734924316},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7291146516799927},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5582493543624878},{"id":"https://openalex.org/C58041806","wikidata":"https://www.wikidata.org/wiki/Q1660484","display_name":"Imputation (statistics)","level":3,"score":0.5087445378303528},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.4962385296821594},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.42473727464675903},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37039706110954285},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.23046818375587463},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.19508519768714905},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.17050600051879883},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16053178906440735},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/globalsip.2013.6736809","is_oa":false,"landing_page_url":"https://doi.org/10.1109/globalsip.2013.6736809","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE Global Conference on Signal and Information Processing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.550000011920929,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W1990073900","https://openalex.org/W2024872854","https://openalex.org/W2106333302","https://openalex.org/W2121762798","https://openalex.org/W2142563181"],"related_works":["https://openalex.org/W3022229171","https://openalex.org/W2913190967","https://openalex.org/W587719479","https://openalex.org/W3165307885","https://openalex.org/W3097390808","https://openalex.org/W2611724343","https://openalex.org/W4391681741","https://openalex.org/W3014702057","https://openalex.org/W2982104316","https://openalex.org/W2286251263"],"abstract_inverted_index":{"We":[0,43],"deployed":[1],"the":[2,8,11,17,23,30,39,56,65,82],"genetic":[3],"variant":[4],"pipeline":[5],"SNPTools":[6,19],"in":[7,61],"cloud":[9,18,70,76],"utilizing":[10],"Amazon":[12,50,57],"Web":[13],"Service":[14,60],"(AWS).":[15],"With":[16],"pipeline,":[20],"we":[21],"performed":[22],"SNP":[24],"calling":[25],"and":[26,37,55,67],"genotype":[27],"imputation":[28],"on":[29],"1000":[31],"Genomes":[32],"Project":[33],"Phase":[34],"3":[35],"data":[36,86],"assessed":[38],"quality":[40],"of":[41,48,69],"SNPs.":[42],"also":[44],"explored":[45],"different":[46],"strategies":[47],"exploiting":[49],"Elastic":[51],"Cloud":[52],"Compute":[53],"instances":[54],"Simple":[58],"Storage":[59],"order":[62],"to":[63,81],"optimize":[64],"performance":[66],"cost":[68],"computing.":[71],"Our":[72],"analysis":[73],"shows":[74],"that":[75],"computing":[77],"will":[78],"be":[79],"indispensable":[80],"Next":[83],"Generation":[84],"Sequencing":[85],"processing.":[87]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}