{"id":"https://openalex.org/W2020114241","doi":"https://doi.org/10.1109/gensips.2013.6735944","title":"DBComposer: An R package for integrative analysis and management of gene expression microarray data","display_name":"DBComposer: An R package for integrative analysis and management of gene expression microarray data","publication_year":2013,"publication_date":"2013-11-01","ids":{"openalex":"https://openalex.org/W2020114241","doi":"https://doi.org/10.1109/gensips.2013.6735944","mag":"2020114241"},"language":"en","primary_location":{"id":"doi:10.1109/gensips.2013.6735944","is_oa":false,"landing_page_url":"https://doi.org/10.1109/gensips.2013.6735944","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE International Workshop on Genomic Signal Processing and Statistics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013109508","display_name":"Lingjia Kong","orcid":"https://orcid.org/0000-0003-1016-030X"},"institutions":[{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Lingjia Kong","raw_affiliation_strings":["Department of Signal Processing Tampere University of Technology, Tampere, Finland","Dept. of Signal Process., Tampere Univ. of Technol., Tampere, , Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Signal Processing Tampere University of Technology, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Dept. of Signal Process., Tampere Univ. of Technol., Tampere, , Finland","institution_ids":["https://openalex.org/I150589677"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069121536","display_name":"Kaisa-Leena Aho","orcid":null},"institutions":[{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Kaisa-Leena Aho","raw_affiliation_strings":["Tampereen yliopisto - Hervannan kampus, Tampere, Pirkanmaa, FI","Dept. of Signal Process., Tampere Univ. of Technol., Tampere, , Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tampereen yliopisto - Hervannan kampus, Tampere, Pirkanmaa, FI","institution_ids":[]},{"raw_affiliation_string":"Dept. of Signal Process., Tampere Univ. of Technol., Tampere, , Finland","institution_ids":["https://openalex.org/I150589677"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113545802","display_name":"Kirsi J. Granberg","orcid":null},"institutions":[{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Kirsi Granberg","raw_affiliation_strings":["Department of Signal Processing Tampere University of Technology, Tampere, Finland","Dept. of Signal Process., Tampere Univ. of Technol., Tampere, , Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Signal Processing Tampere University of Technology, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Dept. of Signal Process., Tampere Univ. of Technol., Tampere, , Finland","institution_ids":["https://openalex.org/I150589677"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070201537","display_name":"Christophe Roos","orcid":"https://orcid.org/0000-0003-0982-7664"},"institutions":[{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Christophe Roos","raw_affiliation_strings":["Department of Signal Processing Tampere University of Technology, Tampere, Finland","Dept. of Signal Process., Tampere Univ. of Technol., Tampere, , Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Signal Processing Tampere University of Technology, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Dept. of Signal Process., Tampere Univ. of Technol., Tampere, , Finland","institution_ids":["https://openalex.org/I150589677"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043136187","display_name":"Reija Autio","orcid":"https://orcid.org/0000-0002-6519-2715"},"institutions":[{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Reija Autio","raw_affiliation_strings":["Department of Signal Processing Tampere University of Technology, Tampere, Finland","Dept. of Signal Process., Tampere Univ. of Technol., Tampere, , Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Signal Processing Tampere University of Technology, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Dept. of Signal Process., Tampere Univ. of Technol., Tampere, , Finland","institution_ids":["https://openalex.org/I150589677"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13147469,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"37","issue":null,"first_page":"92","last_page":"93"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9710000157356262,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.802976131439209},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7631988525390625},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.6943172216415405},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.6646750569343567},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.6386612057685852},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.532484233379364},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5306352972984314},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4853312075138092},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.483817994594574},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.41245874762535095},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.39995765686035156},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.35645148158073425},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.18589335680007935},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11263325810432434},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11094430088996887},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.099158376455307},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.05901274085044861}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.802976131439209},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7631988525390625},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.6943172216415405},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.6646750569343567},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.6386612057685852},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.532484233379364},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5306352972984314},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4853312075138092},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.483817994594574},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.41245874762535095},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.39995765686035156},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.35645148158073425},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.18589335680007935},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11263325810432434},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11094430088996887},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.099158376455307},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.05901274085044861},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/gensips.2013.6735944","is_oa":false,"landing_page_url":"https://doi.org/10.1109/gensips.2013.6735944","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE International Workshop on Genomic Signal Processing and Statistics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1546952499","https://openalex.org/W1935711581","https://openalex.org/W1969761972","https://openalex.org/W2106608030","https://openalex.org/W2116634113","https://openalex.org/W2135827569","https://openalex.org/W2138255346","https://openalex.org/W4229880569"],"related_works":["https://openalex.org/W2943416042","https://openalex.org/W1544923801","https://openalex.org/W3152114242","https://openalex.org/W2961215453","https://openalex.org/W77579337","https://openalex.org/W2024853484","https://openalex.org/W2098339479","https://openalex.org/W2086336666","https://openalex.org/W1558015528","https://openalex.org/W1496974872"],"abstract_inverted_index":{"DBComposer":[0,34],"is":[1],"an":[2],"R":[3,62],"package":[4],"with":[5],"a":[6,39,70],"graphical":[7],"user":[8],"interface":[9],"(GUI)":[10],"to":[11,46,73,77],"analyze":[12],"and":[13,29,66,68],"integrate":[14],"human":[15],"gene":[16],"expression":[17,41],"microarray":[18,42],"data.":[19],"With":[20],"DBComposer,":[21],"the":[22,79],"data":[23,55,80],"can":[24,35],"be":[25],"easily":[26],"annotated,":[27],"preprocessed":[28],"analyzed":[30],"in":[31],"several":[32],"ways.":[33],"also":[36],"serve":[37],"as":[38],"personal":[40],"database":[43],"allowing":[44],"users":[45],"store":[47],"multiple":[48],"datasets":[49],"together":[50],"for":[51,64],"later":[52],"retrieval":[53],"or":[54],"analysis.":[56],"It":[57],"takes":[58],"advantage":[59],"of":[60],"many":[61],"packages":[63],"statistics":[65],"visualizations,":[67],"provides":[69],"flexible":[71],"framework":[72],"implement":[74],"custom":[75],"workflows":[76],"extend":[78],"analysis":[81],"capabilities.":[82]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}