{"id":"https://openalex.org/W1992011064","doi":"https://doi.org/10.1109/gensips.2012.6507753","title":"Inferring gene functions from metabolic reactions","display_name":"Inferring gene functions from metabolic reactions","publication_year":2012,"publication_date":"2012-12-01","ids":{"openalex":"https://openalex.org/W1992011064","doi":"https://doi.org/10.1109/gensips.2012.6507753","mag":"1992011064"},"language":"en","primary_location":{"id":"doi:10.1109/gensips.2012.6507753","is_oa":false,"landing_page_url":"https://doi.org/10.1109/gensips.2012.6507753","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000929673","display_name":"G\u00fcnhan G\u00fclsoy","orcid":"https://orcid.org/0000-0001-8482-2930"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"G\u00fcnhan G\u00fclsoy","raw_affiliation_strings":["Department of Computer &amp; Information Science &amp; Engineering, University of Florida, Gainesville, FL","Dept. of Comput. & Inf. Sci. & Eng., Univ. of Florida, Gainesville, FL"],"affiliations":[{"raw_affiliation_string":"Department of Computer &amp; Information Science &amp; Engineering, University of Florida, Gainesville, FL","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Dept. of Comput. & Inf. Sci. & Eng., Univ. of Florida, Gainesville, FL","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091769289","display_name":"Tamer Kahveci","orcid":"https://orcid.org/0000-0002-4403-8612"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tamer Kahveci","raw_affiliation_strings":["Department of Computer &amp; Information Science &amp; Engineering, University of Florida, Gainesville, FL","Dept. of Comput. & Inf. Sci. & Eng., Univ. of Florida, Gainesville, FL"],"affiliations":[{"raw_affiliation_string":"Department of Computer &amp; Information Science &amp; Engineering, University of Florida, Gainesville, FL","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Dept. of Comput. & Inf. Sci. & Eng., Univ. of Florida, Gainesville, FL","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5000929673"],"corresponding_institution_ids":["https://openalex.org/I33213144"],"apc_list":null,"apc_paid":null,"fwci":0.1313,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.50103635,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"159","last_page":"163"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.6683283448219299},{"id":"https://openalex.org/keywords/steady-state","display_name":"Steady state (chemistry)","score":0.6560540199279785},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.6388279795646667},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5868706703186035},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.5499708652496338},{"id":"https://openalex.org/keywords/gene-cluster","display_name":"Gene cluster","score":0.5334271192550659},{"id":"https://openalex.org/keywords/conjecture","display_name":"Conjecture","score":0.5299450159072876},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5271803140640259},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.52512127161026},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4801487326622009},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.4363499581813812},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.4163474440574646},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3942722678184509},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.36682963371276855},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3536348342895508},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.25651484727859497},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2266228199005127},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1621060073375702},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.14301100373268127},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.10185256600379944}],"concepts":[{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.6683283448219299},{"id":"https://openalex.org/C8171440","wikidata":"https://www.wikidata.org/wiki/Q903414","display_name":"Steady state (chemistry)","level":2,"score":0.6560540199279785},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.6388279795646667},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5868706703186035},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.5499708652496338},{"id":"https://openalex.org/C36857842","wikidata":"https://www.wikidata.org/wiki/Q1501261","display_name":"Gene cluster","level":3,"score":0.5334271192550659},{"id":"https://openalex.org/C2780990831","wikidata":"https://www.wikidata.org/wiki/Q319141","display_name":"Conjecture","level":2,"score":0.5299450159072876},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5271803140640259},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.52512127161026},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4801487326622009},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.4363499581813812},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.4163474440574646},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3942722678184509},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.36682963371276855},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3536348342895508},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.25651484727859497},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2266228199005127},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1621060073375702},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.14301100373268127},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.10185256600379944},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C147789679","wikidata":"https://www.wikidata.org/wiki/Q11372","display_name":"Physical chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/gensips.2012.6507753","is_oa":false,"landing_page_url":"https://doi.org/10.1109/gensips.2012.6507753","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1810381379","https://openalex.org/W1970556744","https://openalex.org/W2020241931","https://openalex.org/W2034108028","https://openalex.org/W2068540088","https://openalex.org/W2075283200","https://openalex.org/W2094399313","https://openalex.org/W2099039198","https://openalex.org/W2099551325","https://openalex.org/W2103017472","https://openalex.org/W2104009289","https://openalex.org/W2104315543","https://openalex.org/W2110017370","https://openalex.org/W2110355460","https://openalex.org/W2120636855","https://openalex.org/W2121249893","https://openalex.org/W2142747156","https://openalex.org/W2148944713","https://openalex.org/W2157239641"],"related_works":["https://openalex.org/W24843447","https://openalex.org/W94193318","https://openalex.org/W2073808674","https://openalex.org/W2173289516","https://openalex.org/W322176015","https://openalex.org/W20947408","https://openalex.org/W2028140658","https://openalex.org/W2950614386","https://openalex.org/W1976569548","https://openalex.org/W1992011064"],"abstract_inverted_index":{"Metabolic":[0],"networks":[1],"model":[2],"the":[3,22,39,49,62,65,78,91,97,101,112,129,151,177,181,190,196,219,232],"physiological":[4],"processes":[5],"that":[6,69,82,123,159,167,183,187,202,208,213],"transform":[7],"metabolites":[8],"in":[9,18,37,72,111,166,176,189,201],"organisms.":[10],"A":[11],"metabolic":[12,75],"network":[13,76,83,113],"is":[14,184],"considered":[15],"to":[16,44,60,136,186,207],"be":[17],"steady":[19,32,79,98,133,191],"state":[20,192],"if":[21],"rate":[23],"at":[24,162],"which":[25],"all":[26],"such":[27],"transformations":[28],"remain":[29],"unchanged.":[30],"Analyzing":[31],"states":[33,80,99,134],"has":[34],"been":[35],"essential":[36],"understanding":[38],"contribution":[40],"of":[41,48,67,81,93,100,116,131,153,200,223,235],"individual":[42],"molecules":[43],"long":[45],"term":[46,158],"characteristics":[47],"underlying":[50],"organism.":[51],"In":[52],"this":[53,142],"paper,":[54],"we":[55,88,107,147,149,179],"develop":[56],"a":[57,73,170],"novel":[58],"method":[59,229],"establish":[61],"relationship":[63],"between":[64],"functions":[66],"genes":[68,117,124,238],"take":[70],"part":[71],"given":[74],"and":[77,226],"systematically.":[84],"To":[85],"do":[86],"this,":[87],"first":[89],"characterize":[90],"impact":[92],"each":[94,145,154,224],"reaction":[95,110],"on":[96,128],"network.":[102],"Then,":[103],"using":[104],"their":[105],"impacts,":[106],"group":[108,146],"every":[109],"into":[114],"clusters":[115],"with":[118,125,173,218],"similar":[119,126,138],"impacts.":[120],"We":[121,194],"conjecture":[122],"impacts":[127],"set":[130],"possible":[132,205],"tend":[135],"serve":[137],"functions.":[139],"Following":[140],"from":[141],"conjecture,":[143],"for":[144,161],"formed,":[148],"calculate":[150],"enrichment":[152,214],"gene":[155,165,172,188],"ontology":[156],"(GO)":[157],"exists":[160],"least":[163],"one":[164],"group.":[168],"Given":[169],"new":[171],"missing":[174],"annotations":[175,206],"network,":[178],"find":[180],"cluster":[182,203],"closest":[185],"space.":[193],"predict":[195,231],"enriched":[197],"GO":[198,221,233],"terms":[199,222,234],"as":[204],"gene.":[209],"Our":[210],"experiments":[211],"demonstrate":[212],"values":[215],"correlate":[216],"highly":[217],"actual":[220],"reaction,":[225],"thus,":[227],"our":[228],"can":[230],"less":[236],"known":[237],"accurately.":[239]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
