{"id":"https://openalex.org/W1986853039","doi":"https://doi.org/10.1109/gensips.2011.6169483","title":"Fast and parallelized greedy forward selection of genetic variants in Genome-wide association studies","display_name":"Fast and parallelized greedy forward selection of genetic variants in Genome-wide association studies","publication_year":2011,"publication_date":"2011-12-01","ids":{"openalex":"https://openalex.org/W1986853039","doi":"https://doi.org/10.1109/gensips.2011.6169483","mag":"1986853039"},"language":"en","primary_location":{"id":"doi:10.1109/gensips.2011.6169483","is_oa":false,"landing_page_url":"https://doi.org/10.1109/gensips.2011.6169483","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045285235","display_name":"Sebastian Okser","orcid":null},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Sebastian Okser","raw_affiliation_strings":["Turku Centre for Computer Science, University of Turku, Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Turku Centre for Computer Science, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021993986","display_name":"Tapio Pahikkala","orcid":"https://orcid.org/0000-0003-4183-2455"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tapio Pahikkala","raw_affiliation_strings":["Turku Centre for Computer Science, University of Turku, Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Turku Centre for Computer Science, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084144711","display_name":"Antti Airola","orcid":"https://orcid.org/0000-0002-1010-4386"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Antti Airola","raw_affiliation_strings":["Turku Centre for Computer Science, University of Turku, Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Turku Centre for Computer Science, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016681267","display_name":"Tero Aittokallio","orcid":"https://orcid.org/0000-0002-0886-9769"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tero Aittokallio","raw_affiliation_strings":["Institute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, Finland","Turku Centre for Computer Science, University of Turku, Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"raw_affiliation_string":"Turku Centre for Computer Science, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105839982","display_name":"Tapio Salakoski","orcid":null},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tapio Salakoski","raw_affiliation_strings":["Turku Centre for Computer Science, University of Turku, Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Turku Centre for Computer Science, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"447","issue":null,"first_page":"214","last_page":"217"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10351","display_name":"Liver Disease Diagnosis and Treatment","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7326080799102783},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.6717976331710815},{"id":"https://openalex.org/keywords/greedy-algorithm","display_name":"Greedy algorithm","score":0.6220760345458984},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.6205668449401855},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.46911314129829407},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4333043396472931},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.430372953414917},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.42116957902908325},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3703221082687378},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2696002721786499},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1154317855834961},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10902279615402222},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08773118257522583},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.07984310388565063}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7326080799102783},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.6717976331710815},{"id":"https://openalex.org/C51823790","wikidata":"https://www.wikidata.org/wiki/Q504353","display_name":"Greedy algorithm","level":2,"score":0.6220760345458984},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.6205668449401855},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.46911314129829407},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4333043396472931},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.430372953414917},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.42116957902908325},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3703221082687378},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2696002721786499},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1154317855834961},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10902279615402222},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08773118257522583},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.07984310388565063},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/gensips.2011.6169483","is_oa":false,"landing_page_url":"https://doi.org/10.1109/gensips.2011.6169483","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6200000047683716}],"awards":[],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320065","display_name":"Diabetes UK","ror":"https://ror.org/050rgn017"},{"id":"https://openalex.org/F4320321726","display_name":"Suomen Kulttuurirahasto","ror":"https://ror.org/027xav248"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1619226191","https://openalex.org/W1975990737","https://openalex.org/W2037495825","https://openalex.org/W2037842760","https://openalex.org/W2042308063","https://openalex.org/W2085039669","https://openalex.org/W2109722477","https://openalex.org/W2110652811","https://openalex.org/W2116283626","https://openalex.org/W2121514846","https://openalex.org/W2134783591","https://openalex.org/W2161633633","https://openalex.org/W2162158218","https://openalex.org/W6676367512"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W3183948672","https://openalex.org/W3173606202","https://openalex.org/W3110381201","https://openalex.org/W2948807893","https://openalex.org/W2935909890","https://openalex.org/W2778153218","https://openalex.org/W2758277628","https://openalex.org/W1531601525","https://openalex.org/W2335257745"],"abstract_inverted_index":{"We":[0,84],"present":[1],"the":[2,44,49,54,59,64,86,89,124],"application":[3],"of":[4,38,43,51,56,66,106,119,145],"a":[5,16,134],"regularized":[6],"least-squares":[7],"based":[8],"algorithm,":[9],"known":[10],"as":[11],"greedy":[12],"RLS,":[13],"to":[14,31],"perform":[15],"wrapper-based":[17],"feature":[18,121],"selection":[19],"on":[20,35,81,88,133],"an":[21],"entire":[22],"genome-wide":[23],"association":[24],"dataset.":[25],"Wrapper":[26],"methods":[27],"were":[28],"previously":[29],"thought":[30],"be":[32,75],"computationally":[33],"infeasible":[34],"these":[36],"types":[37],"studies.":[39],"The":[40],"running":[41],"time":[42],"method":[45,87,116],"grows":[46],"linearly":[47],"in":[48,58,129,143],"number":[50,55,65],"training":[52],"examples,":[53],"features":[57],"original":[60],"data":[61],"set,":[62],"and":[63,109,138],"selected":[67],"features.":[68],"Moreover,":[69],"we":[70],"show":[71],"how":[72],"it":[73],"can":[74],"further":[76],"accelerated":[77],"using":[78],"parallel":[79],"computation":[80],"multi-core":[82],"processors.":[83],"tested":[85],"Wellcome":[90],"Trust":[91],"Case":[92],"Control":[93],"Consortium's":[94],"(WTCCC)":[95],"Type":[96],"2":[97],"Diabetes":[98],"-":[99],"UK":[100],"National":[101],"Blood":[102],"Service":[103],"dataset":[104],"consisting":[105],"3,382":[107],"subjects":[108],"404,569":[110],"single":[111],"nucleotide":[112],"polymorphisms":[113],"(SNPs).":[114],"Our":[115],"is":[117],"capable":[118],"high-speed":[120],"selection,":[122],"selecting":[123],"top":[125],"100":[126],"predictive":[127,146],"SNPs":[128],"under":[130],"five":[131],"minutes":[132],"high":[135],"end":[136],"desktop":[137],"outperforms":[139],"typical":[140],"filter":[141],"approaches":[142],"terms":[144],"performance.":[147]},"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
