{"id":"https://openalex.org/W2091210848","doi":"https://doi.org/10.1109/gensips.2011.6169473","title":"A novel approach for alignments output storage problem facing clinical scenarios","display_name":"A novel approach for alignments output storage problem facing clinical scenarios","publication_year":2011,"publication_date":"2011-12-01","ids":{"openalex":"https://openalex.org/W2091210848","doi":"https://doi.org/10.1109/gensips.2011.6169473","mag":"2091210848"},"language":"en","primary_location":{"id":"doi:10.1109/gensips.2011.6169473","is_oa":false,"landing_page_url":"https://doi.org/10.1109/gensips.2011.6169473","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026912459","display_name":"Yiqi Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiqi Lu","raw_affiliation_strings":["School of Computer Science, Fudan University, Shanghai, China","School of Computer Science  Fudan University  Shanghai 200433  China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"School of Computer Science  Fudan University  Shanghai 200433  China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090455375","display_name":"Yanghua Xiao","orcid":"https://orcid.org/0000-0001-8403-9591"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanghua Xiao","raw_affiliation_strings":["School of Computer Science, Fudan University, Shanghai, China","School of Computer Science  Fudan University  Shanghai 200433  China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"School of Computer Science  Fudan University  Shanghai 200433  China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055794991","display_name":"Yaoliang Chen","orcid":"https://orcid.org/0000-0002-9763-7803"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaoliang Chen","raw_affiliation_strings":["School of Computer Science, Fudan University, Shanghai, China","School of Computer Science  Fudan University  Shanghai 200433  China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"School of Computer Science  Fudan University  Shanghai 200433  China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100730271","display_name":"Danfeng Xu","orcid":"https://orcid.org/0000-0002-4175-1009"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Danfeng Xu","raw_affiliation_strings":["School of Computer Science, Fudan University, Shanghai, China","School of Computer Science  Fudan University  Shanghai 200433  China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"School of Computer Science  Fudan University  Shanghai 200433  China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108379172","display_name":"Fuli Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I157394403","display_name":"Baylor University","ror":"https://ror.org/005781934","country_code":"US","type":"education","lineage":["https://openalex.org/I157394403"]},{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fuli Yu","raw_affiliation_strings":["The Human Genome Sequencing Center, Baylor University College of Medicine, Houston, TX, USA","The Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Human Genome Sequencing Center, Baylor University College of Medicine, Houston, TX, USA","institution_ids":["https://openalex.org/I157394403"]},{"raw_affiliation_string":"The Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, 77030, USA","institution_ids":["https://openalex.org/I181547552"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.18005652,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"174","last_page":"177"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7983437776565552},{"id":"https://openalex.org/keywords/position","display_name":"Position (finance)","score":0.5677900910377502},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5557794570922852},{"id":"https://openalex.org/keywords/work","display_name":"Work (physics)","score":0.5068441033363342},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.4725648760795593},{"id":"https://openalex.org/keywords/file-system","display_name":"File system","score":0.4217499792575836},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3881683647632599},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.36253821849823},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3581116795539856},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10170158743858337},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07934820652008057}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7983437776565552},{"id":"https://openalex.org/C198082294","wikidata":"https://www.wikidata.org/wiki/Q3399648","display_name":"Position (finance)","level":2,"score":0.5677900910377502},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5557794570922852},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.5068441033363342},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.4725648760795593},{"id":"https://openalex.org/C2780940931","wikidata":"https://www.wikidata.org/wiki/Q174989","display_name":"File system","level":2,"score":0.4217499792575836},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3881683647632599},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.36253821849823},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3581116795539856},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10170158743858337},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07934820652008057},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/gensips.2011.6169473","is_oa":false,"landing_page_url":"https://doi.org/10.1109/gensips.2011.6169473","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6000000238418579,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1974727896","https://openalex.org/W2042986967","https://openalex.org/W2110553099","https://openalex.org/W2112509895","https://openalex.org/W2142003566","https://openalex.org/W2159683766"],"related_works":["https://openalex.org/W4390608645","https://openalex.org/W4247566972","https://openalex.org/W4394895745","https://openalex.org/W2960264696","https://openalex.org/W3090563135","https://openalex.org/W2497432351","https://openalex.org/W4206777497","https://openalex.org/W2910064364","https://openalex.org/W4200136508","https://openalex.org/W2499527417"],"abstract_inverted_index":{"With":[0],"ever-developing":[1],"sequencing":[2],"technologies,":[3],"gaps":[4],"between":[5],"sequence":[6],"mapping":[7],"research":[8],"work":[9],"and":[10,34,60],"commercial":[11],"applications":[12],"in":[13,39],"clinical":[14,73],"scenario":[15],"are":[16],"narrowing.":[17],"However,":[18],"the":[19,57,67,80,101],"storage":[20,33,70],"problem":[21,71],"of":[22],"alignment":[23],"results":[24,76],"is":[25],"still":[26,43],"a":[27,62],"big":[28],"challenge":[29],"remained.":[30],"From":[31],"both":[32],"application":[35],"perspectives,":[36],"traditional":[37],"approaches":[38],"alignments":[40,68],"output":[41,69],"files":[42],"leave":[44],"much":[45],"to":[46,54,65],"be":[47],"desired.":[48],"In":[49,93],"this":[50],"paper,":[51],"we":[52],"try":[53],"explore":[55],"on":[56,100,105],"above":[58],"issues":[59],"propose":[61],"novel":[63],"idea":[64],"tackle":[66],"under":[72],"scenarios.":[74],"Experimental":[75],"show":[77],"that":[78],"when":[79],"coverage":[81],"goes":[82],"high,":[83],"our":[84,95],"method":[85,96],"has":[86],"an":[87],"obvious":[88],"advantage":[89],"over":[90],"BAM":[91,98],"file.":[92],"addition,":[94],"outperforms":[97],"file":[99],"genomic":[102],"position":[103],"query":[104],"reads.":[106]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
