{"id":"https://openalex.org/W1981843910","doi":"https://doi.org/10.1109/gensips.2011.6169454","title":"Mapping of international protein index to Affymetrix probe-set identifier for correlating genomics and proteomics expression profiles in multiple myeloma","display_name":"Mapping of international protein index to Affymetrix probe-set identifier for correlating genomics and proteomics expression profiles in multiple myeloma","publication_year":2011,"publication_date":"2011-12-01","ids":{"openalex":"https://openalex.org/W1981843910","doi":"https://doi.org/10.1109/gensips.2011.6169454","mag":"1981843910"},"language":"en","primary_location":{"id":"doi:10.1109/gensips.2011.6169454","is_oa":false,"landing_page_url":"https://doi.org/10.1109/gensips.2011.6169454","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077766447","display_name":"Shweta S. Chavan","orcid":"https://orcid.org/0000-0001-9433-6936"},"institutions":[{"id":"https://openalex.org/I102401767","display_name":"University of Arkansas at Little Rock","ror":"https://ror.org/04fttyv97","country_code":"US","type":"education","lineage":["https://openalex.org/I102401767"]},{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Shweta S. Chavan","raw_affiliation_strings":["UAMS Joint Bioinformatics Program, University of Arkansas, Little Rock, Little Rock, AR, USA","Myeloma Institute for Research and Therapy, University of Arkansas Medical Sciences (UAMS), 4301 W. Markham Street, Slot#776, Little Rock, 72205, USA"],"affiliations":[{"raw_affiliation_string":"UAMS Joint Bioinformatics Program, University of Arkansas, Little Rock, Little Rock, AR, USA","institution_ids":["https://openalex.org/I102401767"]},{"raw_affiliation_string":"Myeloma Institute for Research and Therapy, University of Arkansas Medical Sciences (UAMS), 4301 W. Markham Street, Slot#776, Little Rock, 72205, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027806317","display_name":"John D. Shaughnessy","orcid":"https://orcid.org/0000-0002-2017-6236"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John D. Shaughnessy","raw_affiliation_strings":["Myeloma Institute for Research and Therapy, Medical Sciences, University of Arkansas, Little Rock, AR, USA","Myeloma Institute for Research and Therapy, University of Arkansas Medical Sciences (UAMS), 4301 W. Markham Street, Slot#776, Little Rock, 72205, USA"],"affiliations":[{"raw_affiliation_string":"Myeloma Institute for Research and Therapy, Medical Sciences, University of Arkansas, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]},{"raw_affiliation_string":"Myeloma Institute for Research and Therapy, University of Arkansas Medical Sciences (UAMS), 4301 W. Markham Street, Slot#776, Little Rock, 72205, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000879635","display_name":"Bart Barlogie","orcid":"https://orcid.org/0000-0001-6116-1017"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bart Barlogie","raw_affiliation_strings":["Myeloma Institute for Research and Therapy, Medical Sciences, University of Arkansas, Little Rock, AR, USA","Myeloma Institute for Research and Therapy, University of Arkansas Medical Sciences (UAMS), 4301 W. Markham Street, Slot#776, Little Rock, 72205, USA"],"affiliations":[{"raw_affiliation_string":"Myeloma Institute for Research and Therapy, Medical Sciences, University of Arkansas, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]},{"raw_affiliation_string":"Myeloma Institute for Research and Therapy, University of Arkansas Medical Sciences (UAMS), 4301 W. Markham Street, Slot#776, Little Rock, 72205, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003180228","display_name":"Ricky D. Edmondson","orcid":null},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ricky D. Edmondson","raw_affiliation_strings":["Myeloma Institute for Research and Therapy, Medical Sciences, University of Arkansas, Little Rock, AR, USA","Myeloma Institute for Research and Therapy, University of Arkansas Medical Sciences (UAMS), 4301 W. Markham Street, Slot#776, Little Rock, 72205, USA"],"affiliations":[{"raw_affiliation_string":"Myeloma Institute for Research and Therapy, Medical Sciences, University of Arkansas, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]},{"raw_affiliation_string":"Myeloma Institute for Research and Therapy, University of Arkansas Medical Sciences (UAMS), 4301 W. Markham Street, Slot#776, Little Rock, 72205, USA","institution_ids":["https://openalex.org/I79620101"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5077766447"],"corresponding_institution_ids":["https://openalex.org/I102401767","https://openalex.org/I79620101"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06195248,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"563","issue":null,"first_page":"101","last_page":"104"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.9768000245094299,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9675999879837036,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.8731839060783386},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.6866766810417175},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.6798835396766663},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6706767082214355},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5552720427513123},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5272837281227112},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4249367117881775},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24517077207565308},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1430521309375763},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12024548649787903},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11397334933280945}],"concepts":[{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.8731839060783386},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.6866766810417175},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.6798835396766663},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6706767082214355},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5552720427513123},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5272837281227112},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4249367117881775},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24517077207565308},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1430521309375763},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12024548649787903},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11397334933280945},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/gensips.2011.6169454","is_oa":false,"landing_page_url":"https://doi.org/10.1109/gensips.2011.6169454","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.5299999713897705}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W172603576","https://openalex.org/W2004200760","https://openalex.org/W2023096047","https://openalex.org/W2029195137","https://openalex.org/W2051795211","https://openalex.org/W2055043387","https://openalex.org/W2107580398","https://openalex.org/W2107903949","https://openalex.org/W2131581981","https://openalex.org/W2148911704","https://openalex.org/W2153091158","https://openalex.org/W2154139219","https://openalex.org/W2157357982","https://openalex.org/W2161062388","https://openalex.org/W2401480729","https://openalex.org/W4213060373","https://openalex.org/W4230932396","https://openalex.org/W4236236547","https://openalex.org/W4285719527","https://openalex.org/W6607054263"],"related_works":["https://openalex.org/W1489267134","https://openalex.org/W2087903152","https://openalex.org/W2951946877","https://openalex.org/W2171257316","https://openalex.org/W2068850418","https://openalex.org/W4390973219","https://openalex.org/W4394343303","https://openalex.org/W2058910748","https://openalex.org/W2098932404","https://openalex.org/W2179537696"],"abstract_inverted_index":{"Affymetrix":[0,46,91,117,145,181],"microarrays":[1],"are":[2,23,153,189],"widely":[3],"used":[4,25],"in":[5,26,31,52,65,72,136,172],"genomics":[6,62,101],"studies.":[7],"Likewise,":[8],"International":[9],"Protein":[10],"Index":[11],"(IPI)":[12],"hosted":[13],"at":[14],"European":[15],"Bioinformatics":[16],"Institute":[17],"(EBI)":[18],"and":[19,61,100,134,144,170,180,204],"UniProtKB":[20],"protein":[21,42,86],"databases":[22],"commonly":[24],"proteomics":[27,60,99],"studies,":[28],"more":[29],"so":[30],"mass":[32],"spectrometry":[33],"based":[34],"proteomics.":[35],"However,":[36],"a":[37,140,176],"complete":[38],"mapping":[39,83,108,129],"from":[40],"these":[41,207],"identifiers":[43],"(Ids)":[44],"to":[45,70,80,88,95,110,114,138,155,165,174,191,201],"Ids":[47,87,113],"is":[48,79],"currently":[49],"unavailable":[50],"resulting":[51],"loss":[53],"of":[54,84,98,206],"critical":[55],"information":[56],"while":[57],"inter-converting":[58],"between":[59,142,178],"data-sets.":[63],"This":[64],"turn":[66],"has":[67],"the":[68,82],"potential":[69],"result":[71],"inaccurate":[73],"downstream":[74],"data":[75],"analysis.":[76],"Our":[77],"objective":[78],"maximize":[81],"IPI":[85,112,143,179],"their":[89,115],"corresponding":[90,116],"probe":[92],"set":[93],"Id(s)":[94,146,182],"enable":[96,202],"correlation":[97],"expression":[102],"datasets.":[103],"Thus,":[104],"we":[105],"have":[106],"created":[107,164,200],"tables":[109],"link":[111,141,177],"probe-set":[118],"identifier(s).":[119],"These":[120],"mappings":[121],"were":[122],"obtained":[123],"by":[124],"parsing":[125],"publicly":[126],"available":[127],"standard":[128],"annoannotations":[130],"for":[131,167],"IPI,":[132,168],"Affymetrix,":[133,169],"Ensembl":[135,171],"order":[137,173],"establish":[139,175],"using":[147,183],"all":[148,184],"possible":[149,185],"identifier":[150,186],"types":[151,187],"that":[152,188],"common":[154,190],"both":[156,192],"respective":[157,193],"databases.":[158,194],"A":[159,195],"web-based":[160,196],"tool,":[161,197],"`IPI2Affy'":[162,198],"was":[163,199],"enabletations":[166],"querying":[203],"retrieval":[205],"Id":[208],"conversions":[209],"(http://binfapp.host.ualr.edu/~shweta/ipi2affy.html).":[210]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
