{"id":"https://openalex.org/W2171223863","doi":"https://doi.org/10.1109/fuzzy.2004.1375679","title":"Taxonomy-based soft similarity measures in bioinformatics","display_name":"Taxonomy-based soft similarity measures in bioinformatics","publication_year":2005,"publication_date":"2005-02-22","ids":{"openalex":"https://openalex.org/W2171223863","doi":"https://doi.org/10.1109/fuzzy.2004.1375679","mag":"2171223863"},"language":"en","primary_location":{"id":"doi:10.1109/fuzzy.2004.1375679","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fuzzy.2004.1375679","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2004 IEEE International Conference on Fuzzy Systems (IEEE Cat. No.04CH37542)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018303984","display_name":"James M. Keller","orcid":"https://orcid.org/0000-0002-0306-7142"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J.M. Keller","raw_affiliation_strings":["Electrical and Computer Engineering Department, University of Missouri, Columbia, USA"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering Department, University of Missouri, Columbia, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060329217","display_name":"Mihail Popescu","orcid":"https://orcid.org/0000-0002-6145-8096"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I2800649613","display_name":"University of Missouri Health System","ror":"https://ror.org/03yp8z857","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2800649613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Popescu","raw_affiliation_strings":["Health Management and Informatics Department, University of Missouri, Columbia, USA"],"affiliations":[{"raw_affiliation_string":"Health Management and Informatics Department, University of Missouri, Columbia, USA","institution_ids":["https://openalex.org/I2800649613","https://openalex.org/I76835614"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108131584","display_name":"J. A. Mitchell","orcid":null},"institutions":[{"id":"https://openalex.org/I2800649613","display_name":"University of Missouri Health System","ror":"https://ror.org/03yp8z857","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2800649613"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Mitchell","raw_affiliation_strings":["Health Management and Informatics Department, University of Missouri, Columbia, USA"],"affiliations":[{"raw_affiliation_string":"Health Management and Informatics Department, University of Missouri, Columbia, USA","institution_ids":["https://openalex.org/I2800649613","https://openalex.org/I76835614"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5018303984"],"corresponding_institution_ids":["https://openalex.org/I76835614"],"apc_list":null,"apc_paid":null,"fwci":2.8108,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.90591128,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"1","issue":null,"first_page":"23","last_page":"29"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11063","display_name":"Rough Sets and Fuzzy Logic","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11063","display_name":"Rough Sets and Fuzzy Logic","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9819999933242798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7057743072509766},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6390405297279358},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.5537407398223877},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.55324387550354},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5458704233169556},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5055139064788818},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.470177561044693},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.46354788541793823},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.4329744279384613},{"id":"https://openalex.org/keywords/similarity-measure","display_name":"Similarity measure","score":0.4311928153038025},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31531253457069397},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.31113532185554504},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11817562580108643},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0965692400932312},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09368947148323059}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7057743072509766},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6390405297279358},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.5537407398223877},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.55324387550354},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5458704233169556},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5055139064788818},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.470177561044693},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.46354788541793823},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.4329744279384613},{"id":"https://openalex.org/C2776517306","wikidata":"https://www.wikidata.org/wiki/Q29017317","display_name":"Similarity measure","level":2,"score":0.4311928153038025},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31531253457069397},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.31113532185554504},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11817562580108643},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0965692400932312},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09368947148323059},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/fuzzy.2004.1375679","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fuzzy.2004.1375679","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2004 IEEE International Conference on Fuzzy Systems (IEEE Cat. No.04CH37542)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1484881229","https://openalex.org/W1556265791","https://openalex.org/W2045812729","https://openalex.org/W2060907774","https://openalex.org/W2070448217","https://openalex.org/W2092851543","https://openalex.org/W2137297622","https://openalex.org/W2346443999","https://openalex.org/W6633350825"],"related_works":["https://openalex.org/W2319693127","https://openalex.org/W2226024386","https://openalex.org/W2380654781","https://openalex.org/W2114797768","https://openalex.org/W2474567666","https://openalex.org/W2072263576","https://openalex.org/W2176214140","https://openalex.org/W2790658443","https://openalex.org/W2107952955","https://openalex.org/W2516873349"],"abstract_inverted_index":{"One":[0],"of":[1,40,48,79,96,107,117,155,191,204,218],"the":[2,18,38,46,53,68,72,75,80,94,115,118,123,126,129,158,167,170,176,180,198,221,230],"most":[3],"important":[4],"objects":[5,159],"in":[6,71],"bioinformatics":[7],"is":[8,60,109],"a":[9,26,87,142,146,194,216],"gene":[10,19,31,41,54,98,131,199,222],"product":[11],"(a":[12],"protein":[13],"or":[14],"an":[15],"RNA).":[16],"Besides":[17],"sequence":[20],"and":[21,45],"expression":[22],"values":[23],"found":[24,70],"following":[25],"microarray":[27],"experiment,":[28],"for":[29,92,207],"many":[30],"products,":[32],"additional":[33],"functional":[34],"information":[35],"comes":[36],"from":[37,103,220,229],"set":[39,47,120,217],"ontology":[42,138],"(GO)":[43],"annotations":[44],"journal":[49],"abstracts":[50],"related":[51,81],"to":[52,62,179,227],"product.":[55],"For":[56,125],"these":[57],"genes,":[58],"it":[59,111],"reasonable":[61],"include":[63],"similarity":[64,90,95,148,168],"measures":[65,226],"based":[66],"on":[67,189],"terms":[69,102,219],"GO":[73],"and/or":[74],"index":[76],"term":[77],"sets":[78],"documents":[82,156,192],"(MeSH":[83],"annotations).":[84],"We":[85,201],"propose":[86,141],"fuzzy":[88],"measure-based":[89],"(FMS)":[91],"computing":[93,122],"two":[97,130,211],"products":[99,132],"annotated":[100,135],"with":[101,152],"ontology.":[104],"The":[105],"advantage":[106],"FMS":[108,205],"that":[110,144],"takes":[112],"into":[113,193],"consideration":[114],"context":[116],"whole":[119],"when":[121,128],"similarity.":[124],"case":[127],"are":[133,213],"not":[134,162],"by":[136,174,215],"common":[137],"terms,":[139],"we":[140,165,182],"method":[143],"avoids":[145],"zero":[147],"result.":[149],"In":[150],"dealing":[151],"large":[153],"groups":[154],"describing":[157],"under":[160],"consideration,":[161],"only":[163],"do":[164],"determine":[166],"between":[169],"document":[171],"pairs,":[172],"but,":[173],"introducing":[175],"Choquet":[177],"integral":[178],"scenario,":[181],"can":[183],"fuse":[184],"this":[185],"partial":[186],"agreement":[187],"function":[188],"pairs":[190],"single":[195],"value":[196],"relating":[197],"products.":[200],"present":[202],"examples":[203],"calculation":[206],"specific":[208],"situations":[209],"where":[210],"genes":[212],"described":[214],"ontology,":[223],"comparing":[224],"our":[225],"others":[228],"literature.":[231]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
