{"id":"https://openalex.org/W2244422404","doi":"https://doi.org/10.1109/fskd.2015.7382101","title":"Discovery of neighborhood relationships and regulatory patterns between breast cancer and inflammatory genes based on human co-expressed regulatory network","display_name":"Discovery of neighborhood relationships and regulatory patterns between breast cancer and inflammatory genes based on human co-expressed regulatory network","publication_year":2015,"publication_date":"2015-08-01","ids":{"openalex":"https://openalex.org/W2244422404","doi":"https://doi.org/10.1109/fskd.2015.7382101","mag":"2244422404"},"language":"en","primary_location":{"id":"doi:10.1109/fskd.2015.7382101","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fskd.2015.7382101","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 12th International Conference on Fuzzy Systems and Knowledge Discovery (FSKD)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066415299","display_name":"Yanyan Zhou","orcid":"https://orcid.org/0000-0001-5460-8917"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yanyan Zhou","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100320147","display_name":"Li Wan","orcid":"https://orcid.org/0000-0002-9797-0315"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wan Li","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052525388","display_name":"Lina Chen","orcid":"https://orcid.org/0000-0002-4576-6814"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lina Chen","raw_affiliation_strings":["Harbin Medical University, Harbin, Heilongjiang, CN"],"affiliations":[{"raw_affiliation_string":"Harbin Medical University, Harbin, Heilongjiang, CN","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031549863","display_name":"Liangcai Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liangcai Zhang","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108291037","display_name":"Yuehan He","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuehan He","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113543592","display_name":"Junjie Lv","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junjie Lv","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027380530","display_name":"Ruiqiang Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruiqiang Xie","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101467145","display_name":"Jing Jiang","orcid":"https://orcid.org/0000-0001-8237-0977"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Jiang","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100687665","display_name":"Binbin Chen","orcid":"https://orcid.org/0000-0001-5962-3147"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Binbin Chen","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077246875","display_name":"Hao Huang","orcid":"https://orcid.org/0000-0001-7346-7056"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Huang","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100427547","display_name":"Yiran Li","orcid":"https://orcid.org/0000-0002-2507-0676"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiran Li","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5066415299"],"corresponding_institution_ids":["https://openalex.org/I156144747"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08177319,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"51","issue":null,"first_page":"1128","last_page":"1135"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11072","display_name":"Peroxisome Proliferator-Activated Receptors","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.7410442233085632},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.7189123034477234},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6725839376449585},{"id":"https://openalex.org/keywords/gene-co-expression-network","display_name":"Gene co-expression network","score":0.6107396483421326},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.6095166802406311},{"id":"https://openalex.org/keywords/centrality","display_name":"Centrality","score":0.5216979384422302},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5204411149024963},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4760936498641968},{"id":"https://openalex.org/keywords/inflammatory-breast-cancer","display_name":"Inflammatory breast cancer","score":0.44427937269210815},{"id":"https://openalex.org/keywords/regulator-gene","display_name":"Regulator gene","score":0.4304695129394531},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.38813212513923645},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.386788547039032},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.36904633045196533},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3343334197998047}],"concepts":[{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.7410442233085632},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7189123034477234},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6725839376449585},{"id":"https://openalex.org/C2778022302","wikidata":"https://www.wikidata.org/wiki/Q18207329","display_name":"Gene co-expression network","level":5,"score":0.6107396483421326},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.6095166802406311},{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.5216979384422302},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5204411149024963},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4760936498641968},{"id":"https://openalex.org/C2780839634","wikidata":"https://www.wikidata.org/wiki/Q5922406","display_name":"Inflammatory breast cancer","level":4,"score":0.44427937269210815},{"id":"https://openalex.org/C33498276","wikidata":"https://www.wikidata.org/wiki/Q2138797","display_name":"Regulator gene","level":4,"score":0.4304695129394531},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.38813212513923645},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.386788547039032},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.36904633045196533},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3343334197998047},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/fskd.2015.7382101","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fskd.2015.7382101","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 12th International Conference on Fuzzy Systems and Knowledge Discovery (FSKD)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.699999988079071}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W33338774","https://openalex.org/W1997159855","https://openalex.org/W1998831452","https://openalex.org/W2002835770","https://openalex.org/W2004260843","https://openalex.org/W2005028301","https://openalex.org/W2010000580","https://openalex.org/W2019069212","https://openalex.org/W2023236265","https://openalex.org/W2024839376","https://openalex.org/W2034269086","https://openalex.org/W2046444246","https://openalex.org/W2055677253","https://openalex.org/W2064672822","https://openalex.org/W2067368732","https://openalex.org/W2068229930","https://openalex.org/W2069733150","https://openalex.org/W2070212400","https://openalex.org/W2072092660","https://openalex.org/W2088947549","https://openalex.org/W2100526049","https://openalex.org/W2104478726","https://openalex.org/W2105143167","https://openalex.org/W2106787323","https://openalex.org/W2109058963","https://openalex.org/W2112262143","https://openalex.org/W2112947018","https://openalex.org/W2113041803","https://openalex.org/W2117692326","https://openalex.org/W2119114096","https://openalex.org/W2119686606","https://openalex.org/W2121365554","https://openalex.org/W2126844771","https://openalex.org/W2127245395","https://openalex.org/W2130790725","https://openalex.org/W2136495845","https://openalex.org/W2139074343","https://openalex.org/W2142125950","https://openalex.org/W2146678343","https://openalex.org/W2146994504","https://openalex.org/W2152802862","https://openalex.org/W2153624566","https://openalex.org/W2159482845","https://openalex.org/W2159675211","https://openalex.org/W2161600480","https://openalex.org/W2161654711","https://openalex.org/W2460113768","https://openalex.org/W4294216483","https://openalex.org/W6718743159"],"related_works":["https://openalex.org/W4298064144","https://openalex.org/W4232803304","https://openalex.org/W2073613683","https://openalex.org/W2484944091","https://openalex.org/W1969499963","https://openalex.org/W2479180979","https://openalex.org/W3022482973","https://openalex.org/W4386699707","https://openalex.org/W2948544712","https://openalex.org/W936759852"],"abstract_inverted_index":{"One":[0],"of":[1,52,106,124,139,159,188,196,287],"the":[2,7,94,137,171,186,193,214,259,267,271],"greatest":[3],"challenges":[4],"is":[5,117],"discovering":[6],"underlying":[8,232],"regulatory":[9,37,58,66,73,85],"mechanisms":[10],"between":[11,39,240,270],"cancer":[12,40,64,89,132,150,161,172,203,234,241,248,273],"and":[13,35,41,55,68,83,90,130,133,170,190,213,242,274,284],"inflammatory":[14,42,91,125,134,147,243],"genes.":[15,43,236],"Biological":[16],"network":[17],"could":[18],"act":[19],"as":[20],"a":[21,61,69,98,177,252,279],"bridge":[22],"for":[23,87,266,282],"connecting":[24],"these":[25,103],"two":[26,95,104,157],"topics,":[27],"thus":[28],"network-based":[29,260],"methods":[30],"might":[31],"clarify":[32],"topological":[33],"relationships":[34],"possible":[36,231],"patterns":[38,86],"In":[44,192,257],"this":[45],"article,":[46],"we":[47,79,100,175,223],"firstly":[48],"integrated":[49],"data":[50],"resources":[51],"gene":[53,181],"co-expression":[54,65,72],"human":[56],"transcriptional":[57],"networks.":[59,115],"Then":[60],"tumor-CRN":[62],"(breast":[63],"network)":[67,74],"normal-CRN":[70],"(normal":[71],"were":[75,164,200,207,216,230,245],"constructed.":[76],"After":[77],"that,":[78],"calculated":[80],"centrality":[81,189],"measures":[82],"identified":[84],"breast":[88,131,160,178,202,211,233,272],"genes":[92,107,126,135,148,151,195,199,206,244],"in":[93,113,120,152,247,255],"CRNs.":[96],"As":[97],"result,":[99],"declared":[101],"that":[102,119,146,228],"kinds":[105],"tended":[108],"to":[109,226],"occupy":[110],"important":[111],"positions":[112],"both":[114],"It":[116,142],"interesting":[118],"tumor-CRN,":[121],"clustering":[122],"coefficient":[123],"was":[127,251],"significant":[128],"higher,":[129],"had":[136],"characteristic":[138],"closer":[140],"connectivity.":[141],"may":[143],"be":[144],"inferred":[145],"trigger":[149],"tumor":[153],"state.":[154],"What's":[155],"more,":[156],"types":[158,286],"specific":[162,179],"motifs":[163],"found":[165],"associated":[166,209,218],"with":[167,210,219],"inflammation":[168,283],"accumulation":[169],"process.":[173,221],"Furthermore,":[174],"obtained":[176],"key":[180],"related":[182],"sub-network":[183],"through":[184],"combining":[185],"information":[187],"motifs.":[191],"31":[194],"sub-network,":[197],"2":[198],"known":[201],"genes,":[204],"25":[205],"highly":[208],"cancer,":[212],"others":[215],"confirmed":[217],"carcinogenic":[220],"Therefore,":[222],"have":[224],"reasons":[225],"believe":[227],"they":[229],"candidate":[235],"Meanwhile,":[237],"novel":[238],"regulations":[239],"mined":[246],"pathway,":[249],"which":[250],"new":[253,280],"discovery":[254],"KEGG.":[256],"conclusion,":[258],"approach":[261],"offers":[262],"not":[263],"only":[264],"clue":[265],"complex":[268],"relationship":[269],"inflammation,":[275],"but":[276],"also":[277],"provides":[278],"perspective":[281],"other":[285],"cancer.":[288]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
