{"id":"https://openalex.org/W2050177796","doi":"https://doi.org/10.1109/fskd.2014.6980887","title":"RapidTree: A solution to rapid reconstruction phylogenetic tree","display_name":"RapidTree: A solution to rapid reconstruction phylogenetic tree","publication_year":2014,"publication_date":"2014-08-01","ids":{"openalex":"https://openalex.org/W2050177796","doi":"https://doi.org/10.1109/fskd.2014.6980887","mag":"2050177796"},"language":"en","primary_location":{"id":"doi:10.1109/fskd.2014.6980887","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fskd.2014.6980887","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 11th International Conference on Fuzzy Systems and Knowledge Discovery (FSKD)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009519419","display_name":"Zhen Meng","orcid":"https://orcid.org/0000-0001-5756-9159"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhen Meng","raw_affiliation_strings":["Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, Beijing, China","Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4,4 South Street, Zhongguancun, Haidian District, Beijing 100190, China"],"affiliations":[{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4,4 South Street, Zhongguancun, Haidian District, Beijing 100190, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023198186","display_name":"Jing Shao","orcid":"https://orcid.org/0000-0003-3521-6744"},"institutions":[{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Shao","raw_affiliation_strings":["Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, Beijing, China","Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4,4 South Street, Zhongguancun, Haidian District, Beijing 100190, China"],"affiliations":[{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4,4 South Street, Zhongguancun, Haidian District, Beijing 100190, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103087183","display_name":"Wei Cao","orcid":"https://orcid.org/0000-0003-1620-2419"},"institutions":[{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Cao","raw_affiliation_strings":["Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, Beijing, China","Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4,4 South Street, Zhongguancun, Haidian District, Beijing 100190, China"],"affiliations":[{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4,4 South Street, Zhongguancun, Haidian District, Beijing 100190, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100372619","display_name":"Jianhui Li","orcid":"https://orcid.org/0009-0001-6253-9808"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianhui Li","raw_affiliation_strings":["Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, Beijing, China","Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4,4 South Street, Zhongguancun, Haidian District, Beijing 100190, China"],"affiliations":[{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4,4 South Street, Zhongguancun, Haidian District, Beijing 100190, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065865669","display_name":"Yuanchun Zhou","orcid":"https://orcid.org/0000-0003-2144-1131"},"institutions":[{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanchun Zhou","raw_affiliation_strings":["Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, Beijing, China","Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4,4 South Street, Zhongguancun, Haidian District, Beijing 100190, China"],"affiliations":[{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4,4 South Street, Zhongguancun, Haidian District, Beijing 100190, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024842018","display_name":"Xuezhi Wang","orcid":"https://orcid.org/0000-0001-7592-2358"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuezhi Wang","raw_affiliation_strings":["Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, Beijing, China","Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4,4 South Street, Zhongguancun, Haidian District, Beijing 100190, China"],"affiliations":[{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4,4 South Street, Zhongguancun, Haidian District, Beijing 100190, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5009519419"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210108629"],"apc_list":null,"apc_paid":null,"fwci":0.1394,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.5321396,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"5","issue":null,"first_page":"513","last_page":"517"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.9107463359832764},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6428422331809998},{"id":"https://openalex.org/keywords/computational-phylogenetics","display_name":"Computational phylogenetics","score":0.5230035185813904},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5041588544845581},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.48164287209510803},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.47050899267196655},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.4515378773212433},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.44696754217147827},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.43777304887771606},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34805935621261597},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3377564549446106},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16047775745391846},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10982120037078857},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.10915482044219971},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.07708215713500977}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.9107463359832764},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6428422331809998},{"id":"https://openalex.org/C41168302","wikidata":"https://www.wikidata.org/wiki/Q3772859","display_name":"Computational phylogenetics","level":5,"score":0.5230035185813904},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5041588544845581},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.48164287209510803},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.47050899267196655},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.4515378773212433},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.44696754217147827},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.43777304887771606},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34805935621261597},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3377564549446106},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16047775745391846},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10982120037078857},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.10915482044219971},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.07708215713500977},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/fskd.2014.6980887","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fskd.2014.6980887","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 11th International Conference on Fuzzy Systems and Knowledge Discovery (FSKD)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6200000047683716,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1519266993","https://openalex.org/W1582689234","https://openalex.org/W2017925275","https://openalex.org/W2031498927","https://openalex.org/W2031611770","https://openalex.org/W2036507321","https://openalex.org/W2055666215","https://openalex.org/W2078969200","https://openalex.org/W2095707727","https://openalex.org/W2106882534","https://openalex.org/W2111211467","https://openalex.org/W2113234327","https://openalex.org/W2132247062","https://openalex.org/W2138042866","https://openalex.org/W2147190637","https://openalex.org/W2168696662","https://openalex.org/W2171894968","https://openalex.org/W3121953277","https://openalex.org/W4230606671"],"related_works":["https://openalex.org/W85430217","https://openalex.org/W1532885630","https://openalex.org/W4389053046","https://openalex.org/W2363720861","https://openalex.org/W2800044728","https://openalex.org/W3088015816","https://openalex.org/W2534129866","https://openalex.org/W4287661213","https://openalex.org/W2604174992","https://openalex.org/W2065083790"],"abstract_inverted_index":{"Mass":[0],"data":[1],"has":[2],"accumulated":[3],"with":[4],"the":[5,26,43,50,73,92,97,132],"development":[6],"of":[7,13,25,75,96,101,106,112,117],"DNA":[8],"barcoding":[9],"technology":[10],"for":[11,23],"purpose":[12],"rapid":[14,76],"identification":[15,78],"using":[16,46],"biological":[17],"material":[18],"samples.":[19],"This":[20,53],"is":[21],"prepared":[22],"construction":[24,63,100,105],"big":[27,80],"phylogenetic":[28,61,81,103,113,118],"tree":[29,44,62,82,114,119],"including":[30,94],"numerous":[31],"species,":[32],"but":[33],"also":[34],"raises":[35],"a":[36,56,85,121],"difficult":[37],"question":[38],"how":[39],"to":[40],"locate":[41],"in":[42,120],"quickly":[45,88],"sample":[47],"sequence":[48,67],"representing":[49],"specific":[51],"species.":[52],"paper":[54],"presents":[55],"solution":[57],"based":[58],"on":[59],"initial":[60],"and":[64,79,89,115],"fast":[65],"homology":[66],"alignment":[68],"algorithm,":[69],"which":[70],"can":[71,128],"meet":[72],"need":[74],"species":[77],"growth":[83],"through":[84],"mark":[86],"sequence,":[87],"automatically,":[90],"by":[91],"pipeline":[93],"organization":[95],"basal":[98,107],"dataset,":[99],"underlying":[102],"tree,":[104],"similarity":[108],"comparison":[109],"lib,":[110],"reconstruction":[111],"visualization":[116],"Web":[122],"interactive":[123],"environment.":[124],"The":[125],"RapidTree":[126],"software":[127],"be":[129],"downloaded":[130],"from":[131],"URL:":[133],"http://www.darwintree.cn/common/tools.shtml.":[134]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
