{"id":"https://openalex.org/W2080947423","doi":"https://doi.org/10.1109/fskd.2013.6816292","title":"Long intergenic non-coding RNA detection benefited from integrative modeling of (Epi)genomic data","display_name":"Long intergenic non-coding RNA detection benefited from integrative modeling of (Epi)genomic data","publication_year":2013,"publication_date":"2013-07-01","ids":{"openalex":"https://openalex.org/W2080947423","doi":"https://doi.org/10.1109/fskd.2013.6816292","mag":"2080947423"},"language":"en","primary_location":{"id":"doi:10.1109/fskd.2013.6816292","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fskd.2013.6816292","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 10th International Conference on Fuzzy Systems and Knowledge Discovery (FSKD)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113683918","display_name":"Jie Lv","orcid":"https://orcid.org/0000-0003-2329-4817"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]},{"id":"https://openalex.org/I4210161462","display_name":"Heilongjiang Institute of Technology","ror":"https://ror.org/05x0m9n95","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210161462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Lv","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China","School of Life Science and Technology, Harbin Institute of Technology, Heilongjiang, 150001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology, Heilongjiang, 150001, China","institution_ids":["https://openalex.org/I4210161462","https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045576282","display_name":"Hongbo Liu","orcid":"https://orcid.org/0000-0002-0733-8616"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]},{"id":"https://openalex.org/I4210161462","display_name":"Heilongjiang Institute of Technology","ror":"https://ror.org/05x0m9n95","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210161462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongbo Liu","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China","School of Life Science and Technology, Harbin Institute of Technology, Heilongjiang, 150001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology, Heilongjiang, 150001, China","institution_ids":["https://openalex.org/I4210161462","https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100638546","display_name":"Qiong Wu","orcid":"https://orcid.org/0000-0003-3305-6652"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]},{"id":"https://openalex.org/I4210161462","display_name":"Heilongjiang Institute of Technology","ror":"https://ror.org/05x0m9n95","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210161462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiong Wu","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China","School of Life Science and Technology, Harbin Institute of Technology, Heilongjiang, 150001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology, Heilongjiang, 150001, China","institution_ids":["https://openalex.org/I4210161462","https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10704486,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"14","issue":null,"first_page":"735","last_page":"740"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.777336835861206},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6603370904922485},{"id":"https://openalex.org/keywords/intergenic-region","display_name":"Intergenic region","score":0.6115131378173828},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5864881277084351},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.44839560985565186},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.4174076020717621},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.39631205797195435},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.37124860286712646},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3628655672073364},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.3314831256866455}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.777336835861206},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6603370904922485},{"id":"https://openalex.org/C195139083","wikidata":"https://www.wikidata.org/wiki/Q3463539","display_name":"Intergenic region","level":4,"score":0.6115131378173828},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5864881277084351},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.44839560985565186},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.4174076020717621},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.39631205797195435},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.37124860286712646},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3628655672073364},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.3314831256866455}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/fskd.2013.6816292","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fskd.2013.6816292","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 10th International Conference on Fuzzy Systems and Knowledge Discovery (FSKD)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Reduced inequalities","score":0.6600000262260437,"id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1605441808","https://openalex.org/W1986234964","https://openalex.org/W1988495810","https://openalex.org/W1991959431","https://openalex.org/W1999746344","https://openalex.org/W2000875411","https://openalex.org/W2006334069","https://openalex.org/W2023373744","https://openalex.org/W2055505035","https://openalex.org/W2058805572","https://openalex.org/W2058970225","https://openalex.org/W2059496903","https://openalex.org/W2075320162","https://openalex.org/W2087377443","https://openalex.org/W2097065948","https://openalex.org/W2097360283","https://openalex.org/W2099468911","https://openalex.org/W2100305481","https://openalex.org/W2100779682","https://openalex.org/W2114504176","https://openalex.org/W2116236561","https://openalex.org/W2129078669","https://openalex.org/W2137334937","https://openalex.org/W2141831115","https://openalex.org/W2142735201","https://openalex.org/W2153852650","https://openalex.org/W2156880688","https://openalex.org/W2158050409","https://openalex.org/W2159479647","https://openalex.org/W2160333540","https://openalex.org/W2167714537","https://openalex.org/W2167827709","https://openalex.org/W2171111703","https://openalex.org/W4210347168","https://openalex.org/W4294541781","https://openalex.org/W6636160900"],"related_works":["https://openalex.org/W2571285940","https://openalex.org/W2108267719","https://openalex.org/W2952365809","https://openalex.org/W2163001863","https://openalex.org/W1989930315","https://openalex.org/W4205782745","https://openalex.org/W4307343984","https://openalex.org/W2058984380","https://openalex.org/W1988125422","https://openalex.org/W2900182103"],"abstract_inverted_index":{"Prediction":[0],"of":[1,14,86,137,176],"long":[2],"intergenic":[3],"non-coding":[4,15],"RNAs":[5,16],"(lincRNAs)":[6],"is":[7,125],"a":[8],"prerequisite":[9],"to":[10,32,47,127,130],"analyze":[11],"sequence":[12,23,34,44,100,132],"features":[13,24,101,110,182],"and":[17,98,118,185],"explore":[18],"their":[19],"regulatory":[20],"function.":[21],"Genomic":[22],"provide":[25],"fundamental":[26],"backgrounds":[27],"for":[28,53],"lincRNA":[29,54,87,146,184],"predictions,":[30],"due":[31],"that":[33,62,83,144,169],"information":[35,124],"at":[36],"least":[37],"partially":[38],"aids":[39],"such":[40,69],"predictions.":[41],"However,":[42],"genomic":[43,99,131],"alone":[45],"seems":[46],"reach":[48],"an":[49,138],"end":[50],"involving":[51],"sensitivity":[52],"prediction":[55],"in":[56],"eukaryotes.":[57],"Chromatin":[58],"factors":[59,171],"leave":[60],"marks":[61],"can":[63,89,149,172],"be":[64,90,128,150],"captured":[65],"by":[66,78,102,153],"high-throughput":[67,95],"approaches":[68],"as":[70,76],"ChIP-seq":[71],"are":[72],"also":[73,142,178],"important":[74],"features,":[75],"revealed":[77],"previous":[79],"studies.":[80],"We":[81,141],"demonstrate":[82],"the":[84,135,145,154,166,180],"performance":[85],"predictions":[88],"improved":[91],"when":[92],"incorporating":[93],"both":[94],"chromatin":[96,123,155,170],"modification":[97],"logistic":[103],"regression":[104],"with":[105,157],"LASSO":[106],"regularization.":[107],"The":[108,161],"discriminating":[109,181],"include":[111],"H3K4me1,":[112],"H3K27ac,":[113],"H3K9me3,":[114],"Open":[115],"Reading":[116],"Frames":[117],"several":[119],"repeat":[120],"elements.":[121],"Importantly,":[122],"suggested":[126],"complementary":[129],"information,":[133],"highlighting":[134],"importance":[136],"integrated":[139],"model.":[140],"show":[143],"expression":[147,175],"specificity":[148],"efficiently":[151],"modeled":[152],"data":[156],"same":[158],"developmental":[159],"stage.":[160],"study":[162],"not":[163],"only":[164],"supports":[165],"biological":[167],"hypothesis":[168],"regulate":[173],"developmental-stage-specific":[174],"lincRNAs,":[177],"reveals":[179],"between":[183],"coding":[186],"genes.":[187]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}