{"id":"https://openalex.org/W2079028635","doi":"https://doi.org/10.1109/fskd.2010.5569549","title":"Ontology-based knowledge discovery and sharing in bioinformatics and medical informatics: A brief survey","display_name":"Ontology-based knowledge discovery and sharing in bioinformatics and medical informatics: A brief survey","publication_year":2010,"publication_date":"2010-08-01","ids":{"openalex":"https://openalex.org/W2079028635","doi":"https://doi.org/10.1109/fskd.2010.5569549","mag":"2079028635"},"language":"en","primary_location":{"id":"doi:10.1109/fskd.2010.5569549","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fskd.2010.5569549","pdf_url":null,"source":{"id":"https://openalex.org/S4363608217","display_name":"2010 Seventh International Conference on Fuzzy Systems and Knowledge Discovery","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 Seventh International Conference on Fuzzy Systems and Knowledge Discovery","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103191466","display_name":"Jingshan Huang","orcid":"https://orcid.org/0000-0003-2408-2883"},"institutions":[{"id":"https://openalex.org/I83809506","display_name":"University of South Alabama","ror":"https://ror.org/01s7b5y08","country_code":"US","type":"education","lineage":["https://openalex.org/I83809506"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jingshan Huang","raw_affiliation_strings":["School of Computer and Information Sciences, University of South Alabama, Mobile, AL, USA","School of Computer and Information Sciences, University of South Alabama, Mobile, 36688, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Information Sciences, University of South Alabama, Mobile, AL, USA","institution_ids":["https://openalex.org/I83809506"]},{"raw_affiliation_string":"School of Computer and Information Sciences, University of South Alabama, Mobile, 36688, USA","institution_ids":["https://openalex.org/I83809506"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066063885","display_name":"Dejing Dou","orcid":"https://orcid.org/0000-0001-7561-1672"},"institutions":[{"id":"https://openalex.org/I181233156","display_name":"University of Oregon","ror":"https://ror.org/0293rh119","country_code":"US","type":"education","lineage":["https://openalex.org/I181233156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dejing Dou","raw_affiliation_strings":["Computer and Information Science Department, University of Oregon, Eugene, OR, USA","Computer and Information Science Department, University of Oregon, Eugene, 97403, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Information Science Department, University of Oregon, Eugene, OR, USA","institution_ids":["https://openalex.org/I181233156"]},{"raw_affiliation_string":"Computer and Information Science Department, University of Oregon, Eugene, 97403, USA","institution_ids":["https://openalex.org/I181233156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061724331","display_name":"Lei He","orcid":"https://orcid.org/0000-0003-3028-6305"},"institutions":[{"id":"https://openalex.org/I1299022934","display_name":"United States Department of Health and Human Services","ror":"https://ror.org/033jnv181","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lei He","raw_affiliation_strings":["National Institutes of Health DHHS, Bethesda, MD, USA","National Institutes of Health, Bethesda, Maryland, 20892, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institutes of Health DHHS, Bethesda, MD, USA","institution_ids":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"National Institutes of Health, Bethesda, Maryland, 20892, USA","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083236989","display_name":"Patrick J. Hayes","orcid":"https://orcid.org/0000-0002-6639-9187"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]},{"id":"https://openalex.org/I4210137693","display_name":"Siemens (United States)","ror":"https://ror.org/04axb7e79","country_code":"US","type":"company","lineage":["https://openalex.org/I1325886976","https://openalex.org/I4210137693"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pat Hayes","raw_affiliation_strings":["Siemens Corporation Research, Princeton, NJ, USA","Siemens Corporation, Princeton, New Jersy 08540, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Siemens Corporation Research, Princeton, NJ, USA","institution_ids":["https://openalex.org/I4210137693"]},{"raw_affiliation_string":"Siemens Corporation, Princeton, New Jersy 08540, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113479569","display_name":"Jiangbo Dang","orcid":null},"institutions":[{"id":"https://openalex.org/I1335578998","display_name":"Florida Institute for Human and Machine Cognition","ror":"https://ror.org/02napvw46","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1335578998"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiangbo Dang","raw_affiliation_strings":["Institute of Human and Machine Cognition, Pensacola, FL, USA","Institute for Human and Machine Cognition, Pensacola, Florida 32502, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Human and Machine Cognition, Pensacola, FL, USA","institution_ids":["https://openalex.org/I1335578998"]},{"raw_affiliation_string":"Institute for Human and Machine Cognition, Pensacola, Florida 32502, USA","institution_ids":["https://openalex.org/I1335578998"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":null,"first_page":"2203","last_page":"2208"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cyberinfrastructure","display_name":"Cyberinfrastructure","score":0.780610203742981},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7356458902359009},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.7354279160499573},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6875355243682861},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.6077695488929749},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.5116629600524902},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5052469372749329},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5015172958374023},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.4432617425918579},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.41171061992645264},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.21881264448165894},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.17538630962371826},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14086779952049255},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.1158929169178009}],"concepts":[{"id":"https://openalex.org/C2776397876","wikidata":"https://www.wikidata.org/wiki/Q1450531","display_name":"Cyberinfrastructure","level":2,"score":0.780610203742981},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7356458902359009},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.7354279160499573},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6875355243682861},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.6077695488929749},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.5116629600524902},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5052469372749329},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5015172958374023},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.4432617425918579},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.41171061992645264},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.21881264448165894},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.17538630962371826},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14086779952049255},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.1158929169178009},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/fskd.2010.5569549","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fskd.2010.5569549","pdf_url":null,"source":{"id":"https://openalex.org/S4363608217","display_name":"2010 Seventh International Conference on Fuzzy Systems and Knowledge Discovery","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 Seventh International Conference on Fuzzy Systems and Knowledge Discovery","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.601.1576","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.601.1576","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cis.usouthal.edu/~huang/papers/FSKD-10.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.41999998688697815,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":62,"referenced_works":["https://openalex.org/W13175006","https://openalex.org/W25133769","https://openalex.org/W171072173","https://openalex.org/W200052371","https://openalex.org/W1210713739","https://openalex.org/W1489045693","https://openalex.org/W1503700812","https://openalex.org/W1509396824","https://openalex.org/W1517032359","https://openalex.org/W1518614040","https://openalex.org/W1525293890","https://openalex.org/W1532798785","https://openalex.org/W1546802190","https://openalex.org/W1563413502","https://openalex.org/W1571220979","https://openalex.org/W1586850883","https://openalex.org/W1600475986","https://openalex.org/W1965078122","https://openalex.org/W1970629860","https://openalex.org/W1971676632","https://openalex.org/W1973486624","https://openalex.org/W1976142534","https://openalex.org/W2010798628","https://openalex.org/W2020694521","https://openalex.org/W2048024098","https://openalex.org/W2076672578","https://openalex.org/W2088387316","https://openalex.org/W2096939566","https://openalex.org/W2108267498","https://openalex.org/W2113142309","https://openalex.org/W2113473664","https://openalex.org/W2119222751","https://openalex.org/W2130914035","https://openalex.org/W2138105615","https://openalex.org/W2139135093","https://openalex.org/W2152844712","https://openalex.org/W2156543375","https://openalex.org/W2158122759","https://openalex.org/W2162015762","https://openalex.org/W2167062654","https://openalex.org/W2471039261","https://openalex.org/W2611894836","https://openalex.org/W2914271914","https://openalex.org/W4255092387","https://openalex.org/W6600521019","https://openalex.org/W6601034103","https://openalex.org/W6606960467","https://openalex.org/W6608241714","https://openalex.org/W6627974935","https://openalex.org/W6629294987","https://openalex.org/W6630732678","https://openalex.org/W6631433081","https://openalex.org/W6631654183","https://openalex.org/W6633762573","https://openalex.org/W6634369680","https://openalex.org/W6635194921","https://openalex.org/W6636039812","https://openalex.org/W6680062358","https://openalex.org/W6680506379","https://openalex.org/W6683959064","https://openalex.org/W6720400643","https://openalex.org/W6959865332"],"related_works":["https://openalex.org/W372138008","https://openalex.org/W2307569040","https://openalex.org/W2131941936","https://openalex.org/W2366067673","https://openalex.org/W2060096282","https://openalex.org/W4237581822","https://openalex.org/W1512106414","https://openalex.org/W2541393756","https://openalex.org/W2887634402","https://openalex.org/W2385643360"],"abstract_inverted_index":{"Worldwide":[0],"health":[1],"scientists":[2],"are":[3,65,111],"producing,":[4],"accessing,":[5],"analyzing,":[6],"integrating,":[7],"and":[8,20,29,45,53,70,80,93,100,117,120,154,160],"storing":[9],"massive":[10],"amounts":[11],"of":[12,40,126],"digital":[13],"medical":[14,99,116,159],"data":[15,31,43,63,68,77,128],"daily,":[16],"through":[17],"observation,":[18],"experimentation,":[19],"simulation.":[21],"If":[22],"we":[23,146],"were":[24],"able":[25],"to":[26,85,89,113],"effectively":[27],"transfer":[28],"integrate":[30,90],"from":[32],"all":[33,41],"possible":[34],"resources,":[35],"then":[36],"a":[37],"deeper":[38],"understanding":[39],"these":[42],"sets":[44],"better":[46],"exposed":[47],"knowledge,":[48],"along":[49],"with":[50],"appropriate":[51],"insights":[52],"actions,":[54],"would":[55],"be":[56],"granted.":[57],"Unfortunately,":[58],"in":[59,75,78,140,151,158],"many":[60],"cases,":[61],"the":[62,67,87,97,107,122,148],"users":[64],"not":[66],"producers,":[69],"they":[71],"thus":[72],"face":[73],"challenges":[74],"harnessing":[76],"unforeseen":[79],"unplanned":[81],"ways.":[82],"In":[83,143],"order":[84],"obtain":[86],"ability":[88],"heterogeneous":[91],"data,":[92,119],"thereby":[94],"efficiently":[95],"revolutionize":[96],"traditional":[98,115],"biological":[101,118,161],"research,":[102],"new":[103],"methodologies":[104],"built":[105],"upon":[106],"increasingly":[108],"pervasive":[109],"cyberinfrastructure":[110],"required":[112],"conceptualize":[114],"acquire":[121],"\u201cdeep\u201d":[123],"knowledge":[124,132],"out":[125],"original":[127],"thereafter.":[129],"As":[130],"formal":[131],"representation":[133],"models,":[134],"ontologies":[135],"can":[136],"render":[137],"invaluable":[138],"help":[139],"this":[141,144],"regard.":[142],"paper,":[145],"summarize":[147],"state-of-the-art":[149],"research":[150],"ontological":[152],"techniques":[153],"their":[155],"innovative":[156],"application":[157],"areas.":[162]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}