{"id":"https://openalex.org/W2096005204","doi":"https://doi.org/10.1109/fpt.2008.4762367","title":"Hardware Acceleration of Approximate Palindromes Searching","display_name":"Hardware Acceleration of Approximate Palindromes Searching","publication_year":2008,"publication_date":"2008-12-01","ids":{"openalex":"https://openalex.org/W2096005204","doi":"https://doi.org/10.1109/fpt.2008.4762367","mag":"2096005204"},"language":"en","primary_location":{"id":"doi:10.1109/fpt.2008.4762367","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fpt.2008.4762367","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 International Conference on Field-Programmable Technology","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101714775","display_name":"Tom\u00e1\u0161 Mart\u00ednek","orcid":"https://orcid.org/0000-0003-3118-8475"},"institutions":[{"id":"https://openalex.org/I60587646","display_name":"Brno University of Technology","ror":"https://ror.org/03613d656","country_code":"CZ","type":"education","lineage":["https://openalex.org/I60587646"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Tomas Martinek","raw_affiliation_strings":["Faculty of Information Technology, Brno University of Technology, Brno, Czech Republic","Fac. of Inf. Technol., Brno Univ. of Technol.., Brno"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, Brno University of Technology, Brno, Czech Republic","institution_ids":["https://openalex.org/I60587646"]},{"raw_affiliation_string":"Fac. of Inf. Technol., Brno Univ. of Technol.., Brno","institution_ids":["https://openalex.org/I60587646"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082104022","display_name":"Matej Lexa","orcid":"https://orcid.org/0000-0002-4213-5259"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Matej Lexa","raw_affiliation_strings":["Faculty of Informatics, Masaryk University, Brno, Czech Republic","[Fac. of Inf., Masaryk Univ., Brno]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Informatics, Masaryk University, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"[Fac. of Inf., Masaryk Univ., Brno]","institution_ids":["https://openalex.org/I21449261"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5036,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.60233783,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"28","issue":null,"first_page":"65","last_page":"72"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7282497882843018},{"id":"https://openalex.org/keywords/palindrome","display_name":"Palindrome","score":0.6856218576431274},{"id":"https://openalex.org/keywords/vhdl","display_name":"VHDL","score":0.6284595131874084},{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.6081368923187256},{"id":"https://openalex.org/keywords/suffix-array","display_name":"Suffix array","score":0.5890265107154846},{"id":"https://openalex.org/keywords/acceleration","display_name":"Acceleration","score":0.5369152426719666},{"id":"https://openalex.org/keywords/hardware-acceleration","display_name":"Hardware acceleration","score":0.5335904359817505},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5190204381942749},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.46934664249420166},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.42928147315979004},{"id":"https://openalex.org/keywords/time-complexity","display_name":"Time complexity","score":0.4156598150730133},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.40200093388557434},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.2713514566421509},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.2386654019355774},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.22549322247505188}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7282497882843018},{"id":"https://openalex.org/C44667518","wikidata":"https://www.wikidata.org/wiki/Q12321","display_name":"Palindrome","level":4,"score":0.6856218576431274},{"id":"https://openalex.org/C36941000","wikidata":"https://www.wikidata.org/wiki/Q209455","display_name":"VHDL","level":3,"score":0.6284595131874084},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.6081368923187256},{"id":"https://openalex.org/C2779259728","wikidata":"https://www.wikidata.org/wiki/Q281472","display_name":"Suffix array","level":3,"score":0.5890265107154846},{"id":"https://openalex.org/C117896860","wikidata":"https://www.wikidata.org/wiki/Q11376","display_name":"Acceleration","level":2,"score":0.5369152426719666},{"id":"https://openalex.org/C13164978","wikidata":"https://www.wikidata.org/wiki/Q600158","display_name":"Hardware acceleration","level":3,"score":0.5335904359817505},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5190204381942749},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.46934664249420166},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.42928147315979004},{"id":"https://openalex.org/C311688","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Time complexity","level":2,"score":0.4156598150730133},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.40200093388557434},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.2713514566421509},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.2386654019355774},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.22549322247505188},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C74650414","wikidata":"https://www.wikidata.org/wiki/Q11397","display_name":"Classical mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/fpt.2008.4762367","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fpt.2008.4762367","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 International Conference on Field-Programmable Technology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1563037552","https://openalex.org/W1566539040","https://openalex.org/W1573844310","https://openalex.org/W1608326296","https://openalex.org/W1629034584","https://openalex.org/W1788719067","https://openalex.org/W1979109797","https://openalex.org/W1990061958","https://openalex.org/W2005454205","https://openalex.org/W2086812946","https://openalex.org/W2094866040","https://openalex.org/W2124281279","https://openalex.org/W2140089940","https://openalex.org/W2163704610","https://openalex.org/W3105371730","https://openalex.org/W4240302460","https://openalex.org/W4285719527","https://openalex.org/W6634270632","https://openalex.org/W6636775288"],"related_works":["https://openalex.org/W2068671326","https://openalex.org/W1911971602","https://openalex.org/W1484466367","https://openalex.org/W1543802159","https://openalex.org/W2439759927","https://openalex.org/W1786707430","https://openalex.org/W28628796","https://openalex.org/W2964071288","https://openalex.org/W4300504307","https://openalex.org/W3022427021"],"abstract_inverted_index":{"Understanding":[0],"the":[1,26,36,90,113,132,148],"structure":[2],"and":[3,80,99,121],"function":[4],"of":[5,12,19,28,38,47,55,95,112],"DNA":[6],"sequences":[7,129],"represents":[8],"an":[9,45],"important":[10],"area":[11],"research":[13],"in":[14,74,118,145],"modern":[15],"biology.":[16],"Unfortunately,":[17],"analysis":[18,42],"such":[20,56],"data":[21],"is":[22,134],"often":[23],"complicated":[24],"by":[25,31,43,141],"presence":[27],"mutations":[29],"introduced":[30],"evolutionary":[32],"processes.":[33],"They":[34],"increase":[35],"time-complexity":[37,77],"algorithms":[39,57],"for":[40,63,92,105,123],"sequence":[41],"introducing":[44],"element":[46],"uncertainty,":[48],"complicating":[49],"their":[50],"practical":[51],"usage.":[52],"One":[53],"class":[54],"has":[58],"been":[59],"designed":[60],"to":[61,136,143],"search":[62],"palindromes":[64],"with":[65,107,147],"possible":[66],"errors-approximate":[67],"palindromes.":[68],"The":[69],"best":[70],"state-of-the-art":[71],"methods":[72],"implemented":[73,117],"software":[75,150],"show":[76],"between":[78],"linear":[79],"quadratic,":[81],"depending":[82],"on":[83,127,153],"required":[84],"input":[85],"parameters.":[86],"This":[87],"paper":[88],"investigates":[89],"possibilities":[91],"hardware":[93],"acceleration":[94],"approximate":[96],"palindrome":[97,139],"searching":[98,140],"describes":[100],"a":[101],"parametrized":[102],"architecture":[103,115],"suitable":[104],"chips":[106],"FPGA":[108],"technology.":[109,125],"A":[110],"prototype":[111],"proposed":[114],"was":[116],"VHDL":[119],"language":[120],"synthesized":[122],"Virtex":[124],"Application":[126],"test":[128],"shows":[130],"that":[131],"circuit":[133],"able":[135],"speed":[137],"up":[138,142],"8000\u00d7":[144],"comparison":[146],"best-known":[149],"method":[151],"relying":[152],"suffix":[154],"arrays.":[155]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}