{"id":"https://openalex.org/W2135258402","doi":"https://doi.org/10.1109/fpl.2005.1515767","title":"Accelerating molecular dynamics simulations with configurable circuits","display_name":"Accelerating molecular dynamics simulations with configurable circuits","publication_year":2005,"publication_date":"2005-10-12","ids":{"openalex":"https://openalex.org/W2135258402","doi":"https://doi.org/10.1109/fpl.2005.1515767","mag":"2135258402"},"language":"en","primary_location":{"id":"doi:10.1109/fpl.2005.1515767","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fpl.2005.1515767","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Conference on Field Programmable Logic and Applications, 2005.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103165522","display_name":"Yongfeng Gu","orcid":"https://orcid.org/0000-0003-0689-6568"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yongfeng Gu","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Boston University, Boston, MA, USA","Dept. of Electr. & Comput. Eng., Boston Univ., MA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Boston University, Boston, MA, USA","institution_ids":["https://openalex.org/I111088046"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., Boston Univ., MA, USA","institution_ids":["https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111925481","display_name":"Tom VanCourt","orcid":null},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. VanCourt","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Boston University, Boston, MA, USA","Dept. of Electr. & Comput. Eng., Boston Univ., MA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Boston University, Boston, MA, USA","institution_ids":["https://openalex.org/I111088046"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., Boston Univ., MA, USA","institution_ids":["https://openalex.org/I111088046"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021051610","display_name":"Martin Herbordt","orcid":"https://orcid.org/0000-0002-3443-9113"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M.C. Herbordt","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Boston University, Boston, MA, USA","Dept. of Electr. & Comput. Eng., Boston Univ., MA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Boston University, Boston, MA, USA","institution_ids":["https://openalex.org/I111088046"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., Boston Univ., MA, USA","institution_ids":["https://openalex.org/I111088046"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5103165522"],"corresponding_institution_ids":["https://openalex.org/I111088046"],"apc_list":null,"apc_paid":null,"fwci":2.0625,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.875,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"475","last_page":"480"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10363","display_name":"Low-power high-performance VLSI design","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.7955043911933899},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6976237893104553},{"id":"https://openalex.org/keywords/sketch","display_name":"Sketch","score":0.6304125189781189},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.6001469492912292},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.5709958672523499},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.5198003053665161},{"id":"https://openalex.org/keywords/electronic-circuit","display_name":"Electronic circuit","score":0.5084132552146912},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.47166264057159424},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4585430920124054},{"id":"https://openalex.org/keywords/dynamics","display_name":"Dynamics (music)","score":0.4119231402873993},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.40637877583503723},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.34860140085220337},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.14254844188690186},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.13652396202087402},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.13358882069587708},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.10783460736274719},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.09461092948913574},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.07606431841850281}],"concepts":[{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.7955043911933899},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6976237893104553},{"id":"https://openalex.org/C2779231336","wikidata":"https://www.wikidata.org/wiki/Q7534724","display_name":"Sketch","level":2,"score":0.6304125189781189},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.6001469492912292},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.5709958672523499},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.5198003053665161},{"id":"https://openalex.org/C134146338","wikidata":"https://www.wikidata.org/wiki/Q1815901","display_name":"Electronic circuit","level":2,"score":0.5084132552146912},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.47166264057159424},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4585430920124054},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.4119231402873993},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.40637877583503723},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.34860140085220337},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.14254844188690186},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13652396202087402},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.13358882069587708},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.10783460736274719},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09461092948913574},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.07606431841850281},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/fpl.2005.1515767","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fpl.2005.1515767","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Conference on Field Programmable Logic and Applications, 2005.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1514336338","https://openalex.org/W1519695777","https://openalex.org/W1555540498","https://openalex.org/W1805979977","https://openalex.org/W1915467593","https://openalex.org/W1976460851","https://openalex.org/W1979573134","https://openalex.org/W1985588649","https://openalex.org/W1993802177","https://openalex.org/W2004773784","https://openalex.org/W2008082933","https://openalex.org/W2035720425","https://openalex.org/W2039425860","https://openalex.org/W2052126816","https://openalex.org/W2059264592","https://openalex.org/W2109395397","https://openalex.org/W2110612653","https://openalex.org/W2128185020","https://openalex.org/W2138376372","https://openalex.org/W2149507607","https://openalex.org/W2150981663","https://openalex.org/W2158049854","https://openalex.org/W2169594918","https://openalex.org/W2761377951","https://openalex.org/W3010525046","https://openalex.org/W3022388728","https://openalex.org/W4237572096","https://openalex.org/W4244370844"],"related_works":["https://openalex.org/W2378994405","https://openalex.org/W2385974820","https://openalex.org/W2373478030","https://openalex.org/W2378679551","https://openalex.org/W3149739944","https://openalex.org/W2392363776","https://openalex.org/W2063051341","https://openalex.org/W2591066345","https://openalex.org/W1494563618","https://openalex.org/W2357022711"],"abstract_inverted_index":{"Molecular":[0],"dynamics":[1],"(MD)":[2],"is":[3,66],"of":[4,43,63,81,90],"central":[5],"importance":[6],"to":[7,30],"computational":[8],"chemistry.":[9],"Here":[10],"we":[11],"show":[12],"that":[13,25],"MD":[14,92],"can":[15,37,52],"be":[16,38,53],"implemented":[17],"efficiently":[18],"on":[19,46,83],"a":[20,34],"COTS":[21],"FPGA":[22,75],"board,":[23],"and":[24,59,77,88],"speed-ups":[26],"from":[27],"31/spl":[28],"times/":[29,32,51],"88/spl":[31],"over":[33],"PC":[35],"implementation":[36],"obtained.":[39],"Although":[40],"the":[41,47,60,64,79,84,91],"amount":[42],"speed-up":[44],"depends":[45],"stability":[48],"required,":[49],"46/spl":[50],"obtained":[54],"with":[55],"virtually":[56],"no":[57],"detriment,":[58],"upper":[61],"end":[62],"range":[65],"apparently":[67],"viable":[68],"in":[69],"many":[70],"cases.":[71],"We":[72],"sketch":[73],"our":[74],"implementations":[76],"describe":[78],"effects":[80],"precision":[82],"trade-off":[85],"between":[86],"performance":[87],"quality":[89],"simulation.":[93]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
