{"id":"https://openalex.org/W4385624279","doi":"https://doi.org/10.1109/eurocon56442.2023.10199075","title":"Medical Named Entity Recognition (MedNER): A Deep Learning Model for Recognizing Medical Entities (Drug, Disease) from Scientific Texts","display_name":"Medical Named Entity Recognition (MedNER): A Deep Learning Model for Recognizing Medical Entities (Drug, Disease) from Scientific Texts","publication_year":2023,"publication_date":"2023-07-06","ids":{"openalex":"https://openalex.org/W4385624279","doi":"https://doi.org/10.1109/eurocon56442.2023.10199075"},"language":"en","primary_location":{"id":"doi:10.1109/eurocon56442.2023.10199075","is_oa":false,"landing_page_url":"https://doi.org/10.1109/eurocon56442.2023.10199075","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE EUROCON 2023 - 20th International Conference on Smart Technologies","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018675704","display_name":"Md Saef Ullah Miah","orcid":"https://orcid.org/0000-0003-4587-4636"},"institutions":[{"id":"https://openalex.org/I103434671","display_name":"American International University-Bangladesh","ror":"https://ror.org/02j8ga255","country_code":"BD","type":"education","lineage":["https://openalex.org/I103434671"]}],"countries":["BD"],"is_corresponding":true,"raw_author_name":"M. Saef Ullah Miah","raw_affiliation_strings":["Faculty of Science and Technology AIUB,Dhaka,Bangladesh","Faculty of Science and Technology AIUB, Dhaka, Bangladesh"],"affiliations":[{"raw_affiliation_string":"Faculty of Science and Technology AIUB,Dhaka,Bangladesh","institution_ids":["https://openalex.org/I103434671"]},{"raw_affiliation_string":"Faculty of Science and Technology AIUB, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I103434671"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006011382","display_name":"Junaida Sulaiman","orcid":"https://orcid.org/0000-0002-7834-5338"},"institutions":[{"id":"https://openalex.org/I102913810","display_name":"Universiti Malaysia Pahang Al-Sultan Abdullah","ror":"https://ror.org/01704wp68","country_code":"MY","type":"education","lineage":["https://openalex.org/I102913810"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Junaida Sulaiman","raw_affiliation_strings":["Faculty of Computing Universiti Malaysia Pahang,Pekan,Malaysia","Faculty of Computing Universiti Malaysia Pahang, Pekan, Malaysia"],"affiliations":[{"raw_affiliation_string":"Faculty of Computing Universiti Malaysia Pahang,Pekan,Malaysia","institution_ids":["https://openalex.org/I102913810"]},{"raw_affiliation_string":"Faculty of Computing Universiti Malaysia Pahang, Pekan, Malaysia","institution_ids":["https://openalex.org/I102913810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037015884","display_name":"Talha Bin Sarwar","orcid":"https://orcid.org/0000-0001-5974-1282"},"institutions":[{"id":"https://openalex.org/I102913810","display_name":"Universiti Malaysia Pahang Al-Sultan Abdullah","ror":"https://ror.org/01704wp68","country_code":"MY","type":"education","lineage":["https://openalex.org/I102913810"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Talha Bin Sarwar","raw_affiliation_strings":["Faculty of Computing Universiti Malaysia Pahang,Pekan,Malaysia","Faculty of Computing Universiti Malaysia Pahang, Pekan, Malaysia"],"affiliations":[{"raw_affiliation_string":"Faculty of Computing Universiti Malaysia Pahang,Pekan,Malaysia","institution_ids":["https://openalex.org/I102913810"]},{"raw_affiliation_string":"Faculty of Computing Universiti Malaysia Pahang, Pekan, Malaysia","institution_ids":["https://openalex.org/I102913810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075674229","display_name":"Saima Sharleen Islam","orcid":"https://orcid.org/0000-0002-3891-4460"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Saima Sharleen Islam","raw_affiliation_strings":["University of Trento,Department of Sociology and Social Research,Trento,Italy","Department of Sociology and Social Research, University of Trento, Trento, Italy"],"affiliations":[{"raw_affiliation_string":"University of Trento,Department of Sociology and Social Research,Trento,Italy","institution_ids":["https://openalex.org/I193223587"]},{"raw_affiliation_string":"Department of Sociology and Social Research, University of Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100763798","display_name":"Mizanur Rahman","orcid":"https://orcid.org/0000-0002-4533-4667"},"institutions":[{"id":"https://openalex.org/I102913810","display_name":"Universiti Malaysia Pahang Al-Sultan Abdullah","ror":"https://ror.org/01704wp68","country_code":"MY","type":"education","lineage":["https://openalex.org/I102913810"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Mizanur Rahman","raw_affiliation_strings":["Faculty of Computing Universiti Malaysia Pahang,Pekan,Malaysia","Faculty of Computing Universiti Malaysia Pahang, Pekan, Malaysia"],"affiliations":[{"raw_affiliation_string":"Faculty of Computing Universiti Malaysia Pahang,Pekan,Malaysia","institution_ids":["https://openalex.org/I102913810"]},{"raw_affiliation_string":"Faculty of Computing Universiti Malaysia Pahang, Pekan, Malaysia","institution_ids":["https://openalex.org/I102913810"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018700159","display_name":"Md. Haque","orcid":"https://orcid.org/0000-0002-3333-6868"},"institutions":[{"id":"https://openalex.org/I205746353","display_name":"University of Dhaka","ror":"https://ror.org/05wv2vq37","country_code":"BD","type":"education","lineage":["https://openalex.org/I205746353"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Md. Samiul Haque","raw_affiliation_strings":["Institute of Information Technology University of Dhaka,Dhaka,Bangladesh","Institute of Information Technology University of Dhaka, Dhaka, Bangladesh"],"affiliations":[{"raw_affiliation_string":"Institute of Information Technology University of Dhaka,Dhaka,Bangladesh","institution_ids":["https://openalex.org/I205746353"]},{"raw_affiliation_string":"Institute of Information Technology University of Dhaka, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I205746353"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5018675704"],"corresponding_institution_ids":["https://openalex.org/I103434671"],"apc_list":null,"apc_paid":null,"fwci":1.7457,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.87579066,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"158","last_page":"162"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.8732215166091919},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7475864291191101},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.647079586982727},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.534083366394043},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5238059759140015},{"id":"https://openalex.org/keywords/named-entity","display_name":"Named entity","score":0.515191912651062},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5073089003562927},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5015890598297119},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4869721829891205},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.48644232749938965},{"id":"https://openalex.org/keywords/scientific-literature","display_name":"Scientific literature","score":0.4508495032787323},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4472700357437134},{"id":"https://openalex.org/keywords/entity-linking","display_name":"Entity linking","score":0.43645524978637695},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.4100492298603058},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.21536248922348022}],"concepts":[{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.8732215166091919},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7475864291191101},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.647079586982727},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.534083366394043},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5238059759140015},{"id":"https://openalex.org/C2777889803","wikidata":"https://www.wikidata.org/wiki/Q25047676","display_name":"Named entity","level":2,"score":0.515191912651062},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5073089003562927},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5015890598297119},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4869721829891205},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.48644232749938965},{"id":"https://openalex.org/C2781083858","wikidata":"https://www.wikidata.org/wiki/Q17327049","display_name":"Scientific literature","level":2,"score":0.4508495032787323},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4472700357437134},{"id":"https://openalex.org/C96711827","wikidata":"https://www.wikidata.org/wiki/Q17012245","display_name":"Entity linking","level":3,"score":0.43645524978637695},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.4100492298603058},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.21536248922348022},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/eurocon56442.2023.10199075","is_oa":false,"landing_page_url":"https://doi.org/10.1109/eurocon56442.2023.10199075","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE EUROCON 2023 - 20th International Conference on Smart Technologies","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6899999976158142}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W179179905","https://openalex.org/W873782400","https://openalex.org/W2079735306","https://openalex.org/W2752413620","https://openalex.org/W2896457183","https://openalex.org/W2948614377","https://openalex.org/W2970771982","https://openalex.org/W2980839612","https://openalex.org/W2992843255","https://openalex.org/W3017117251","https://openalex.org/W3186054896","https://openalex.org/W3198980621","https://openalex.org/W4210496636","https://openalex.org/W4230040612","https://openalex.org/W6607259140","https://openalex.org/W6755207826"],"related_works":["https://openalex.org/W2186562580","https://openalex.org/W2155874911","https://openalex.org/W3000685722","https://openalex.org/W4255258373","https://openalex.org/W2032007337","https://openalex.org/W1884363728","https://openalex.org/W4253099099","https://openalex.org/W4386977977","https://openalex.org/W2757016069","https://openalex.org/W3216421539"],"abstract_inverted_index":{"Medical":[0],"Named":[1],"Entity":[2],"Recognition":[3],"(MedNER)":[4],"is":[5,33],"an":[6],"indispensable":[7],"task":[8],"in":[9,21,48,91,117,127,136],"biomedical":[10,50,137],"text":[11,138],"mining.":[12,139],"NER":[13,61,73],"aims":[14],"to":[15,36,68],"recognize":[16],"and":[17,29,42,55,96,120,125],"categorize":[18],"named":[19,122],"entities":[20,123],"scientific":[22,40,75,88,128],"literature,":[23,129],"such":[24],"as":[25],"genes,":[26],"proteins,":[27],"diseases,":[28],"medications.":[30],"This":[31],"work":[32],"difficult":[34],"due":[35],"the":[37,43,49,70,106,112,131],"complexity":[38],"of":[39,45,72,86,94,114],"language":[41],"abundance":[44],"available":[46],"material":[47],"sector.":[51],"Using":[52],"domain-specific":[53],"embedding":[54],"Bi-LSTM,":[56],"we":[57],"propose":[58],"a":[59,83],"novel":[60],"model":[62,78],"that":[63],"employs":[64],"deep":[65],"learning":[66],"approaches":[67,103],"improve":[69],"performance":[71],"on":[74,82,105],"publications.":[76],"Our":[77,109],"gets":[79],"98%":[80],"F1-score":[81],"curated":[84],"data-set":[85],"Covid-related":[87],"publications":[89],"published":[90],"multiple":[92],"web":[93],"science":[95],"pubmed":[97],"indexed":[98],"journals,":[99],"significantly":[100],"outperforming":[101],"previous":[102],"deployed":[104],"same":[107],"data-set.":[108],"findings":[110],"illustrate":[111],"efficacy":[113],"our":[115],"approach":[116],"reliably":[118],"recognizing":[119],"classifying":[121],"(drug":[124],"disease)":[126],"opening":[130],"way":[132],"for":[133],"future":[134],"developments":[135]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}