{"id":"https://openalex.org/W4414898295","doi":"https://doi.org/10.1109/escience65000.2025.00025","title":"Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)","display_name":"Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)","publication_year":2025,"publication_date":"2025-09-15","ids":{"openalex":"https://openalex.org/W4414898295","doi":"https://doi.org/10.1109/escience65000.2025.00025"},"language":"en","primary_location":{"id":"doi:10.1109/escience65000.2025.00025","is_oa":false,"landing_page_url":"https://doi.org/10.1109/escience65000.2025.00025","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on eScience (eScience)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074135581","display_name":"Daniela Cassol","orcid":"https://orcid.org/0000-0003-2417-6337"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daniela Cassol","raw_affiliation_strings":["Lawrence Berkeley National Laboratory,Berkeley,CA,USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory,Berkeley,CA,USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026153785","display_name":"Alicia Clum","orcid":"https://orcid.org/0000-0002-5004-3362"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alicia Clum","raw_affiliation_strings":["Lawrence Berkeley National Laboratory,Berkeley,CA,USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory,Berkeley,CA,USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088235944","display_name":"Jeff Froula","orcid":"https://orcid.org/0000-0003-2438-4494"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeff Froula","raw_affiliation_strings":["Lawrence Berkeley National Laboratory,Berkeley,CA,USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory,Berkeley,CA,USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064612362","display_name":"Ed Kirton","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ed Kirton","raw_affiliation_strings":["Lawrence Berkeley National Laboratory,Berkeley,CA,USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory,Berkeley,CA,USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060053635","display_name":"Ramani Kothadia","orcid":"https://orcid.org/0000-0002-6378-8494"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ramani Kothadia","raw_affiliation_strings":["Lawrence Berkeley National Laboratory,Berkeley,CA,USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory,Berkeley,CA,USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034216838","display_name":"Mario Melara","orcid":"https://orcid.org/0000-0002-2343-5280"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mario Melara","raw_affiliation_strings":["Lawrence Berkeley National Laboratory,Berkeley,CA,USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory,Berkeley,CA,USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5119879198","display_name":"Elais Player-Jackson","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elais Player-Jackson","raw_affiliation_strings":["Lawrence Berkeley National Laboratory,Berkeley,CA,USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory,Berkeley,CA,USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082260716","display_name":"Setareh Sarrafan","orcid":"https://orcid.org/0000-0001-6870-7289"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Setareh Sarrafan","raw_affiliation_strings":["Lawrence Berkeley National Laboratory,Berkeley,CA,USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory,Berkeley,CA,USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024446241","display_name":"Seung-Jin Sul","orcid":"https://orcid.org/0000-0001-8490-3570"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Seung-Jin Sul","raw_affiliation_strings":["Lawrence Berkeley National Laboratory,Berkeley,CA,USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory,Berkeley,CA,USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090406774","display_name":"Stephan Trong","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephan Trong","raw_affiliation_strings":["Lawrence Berkeley National Laboratory,Berkeley,CA,USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory,Berkeley,CA,USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075485031","display_name":"Nick Tyler","orcid":"https://orcid.org/0000-0001-7079-1301"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nick Tyler","raw_affiliation_strings":["Lawrence Berkeley National Laboratory,Berkeley,CA,USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory,Berkeley,CA,USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088888606","display_name":"Tom\u00e1\u0161 Br\u016fna","orcid":"https://orcid.org/0000-0001-9811-5532"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tom\u00e1\u0161 Br\u016fna","raw_affiliation_strings":["Lawrence Berkeley National Laboratory,Berkeley,CA,USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory,Berkeley,CA,USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052760267","display_name":"Leo Baumgart","orcid":"https://orcid.org/0000-0002-2773-5897"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leo Baumgart","raw_affiliation_strings":["Lawrence Berkeley National Laboratory,Berkeley,CA,USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory,Berkeley,CA,USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058345403","display_name":"Kjiersten Fagnan","orcid":"https://orcid.org/0000-0002-6504-849X"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kjiersten Fagnan","raw_affiliation_strings":["Lawrence Berkeley National Laboratory,Berkeley,CA,USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory,Berkeley,CA,USA","institution_ids":["https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5074135581"],"corresponding_institution_ids":["https://openalex.org/I148283060"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.39955747,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"141","last_page":"149"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9764999747276306,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9764999747276306,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9754999876022339,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.9200000166893005},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.6101999878883362},{"id":"https://openalex.org/keywords/workflow-technology","display_name":"Workflow technology","score":0.6028000116348267},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.49320000410079956},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4745999872684479},{"id":"https://openalex.org/keywords/workflow-engine","display_name":"Workflow engine","score":0.46779999136924744},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.4632999897003174}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.9200000166893005},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7089999914169312},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.6101999878883362},{"id":"https://openalex.org/C19612761","wikidata":"https://www.wikidata.org/wiki/Q8034836","display_name":"Workflow technology","level":3,"score":0.6028000116348267},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.554099977016449},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.49320000410079956},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4745999872684479},{"id":"https://openalex.org/C188220564","wikidata":"https://www.wikidata.org/wiki/Q3325097","display_name":"Workflow engine","level":3,"score":0.46779999136924744},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.4632999897003174},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.45879998803138733},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.3750999867916107},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3732999861240387},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.35569998621940613},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33250001072883606},{"id":"https://openalex.org/C163888707","wikidata":"https://www.wikidata.org/wiki/Q1154450","display_name":"Windows Workflow Foundation","level":4,"score":0.3287000060081482},{"id":"https://openalex.org/C517757529","wikidata":"https://www.wikidata.org/wiki/Q1273268","display_name":"e-Science","level":3,"score":0.31360000371932983},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3102000057697296},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.28380000591278076},{"id":"https://openalex.org/C97300177","wikidata":"https://www.wikidata.org/wiki/Q1994744","display_name":"Data as a service","level":3,"score":0.2502000033855438}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/escience65000.2025.00025","is_oa":false,"landing_page_url":"https://doi.org/10.1109/escience65000.2025.00025","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on eScience (eScience)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W2009900694","https://openalex.org/W2141292707","https://openalex.org/W2146902212","https://openalex.org/W2148317584","https://openalex.org/W2401562190","https://openalex.org/W2607211817","https://openalex.org/W2765745983","https://openalex.org/W3143063265","https://openalex.org/W3160531185","https://openalex.org/W3161251590","https://openalex.org/W3217808315","https://openalex.org/W4316926647","https://openalex.org/W4404112741","https://openalex.org/W4407877295"],"related_works":[],"abstract_inverted_index":{"The":[0,139,183],"JGI":[1,101],"Analysis":[2],"Workflow":[3,74],"Service":[4],"(JAWS)":[5],"is":[6,185],"a":[7,143],"scalable":[8],"and":[9,47,62,72,102,129,151,171,187],"centralized":[10],"workflow":[11,60,144],"execution":[12],"framework":[13],"developed":[14],"by":[15],"the":[16,73,90,100,103,116,172,176,190],"U.S.":[17],"Department":[18],"of":[19,66,141,169],"Energy":[20,118],"Joint":[21],"Genome":[22],"Institute":[23],"(JGI,":[24],"jgi.doe.gov).":[25],"It":[26],"enables":[27],"researchers":[28],"to":[29,52,109,164,166,174],"efficiently":[30],"run":[31],"complex":[32],"computational":[33],"workflows":[34,177],"across":[35],"multiple":[36],"high-performance":[37],"computing":[38],"(HPC)":[39],"resources.":[40],"JAWS":[41,160],"automates":[42],"resource":[43],"configuration,":[44],"data":[45,153],"transfer,":[46],"job":[48],"scheduling,":[49],"allowing":[50],"users":[51,98],"focus":[53],"on":[54,113,130],"their":[55,111],"scientific":[56],"tasks":[57],"while":[58],"ensuring":[59],"reproducibility":[61],"scalability.JAWS":[63],"takes":[64],"advantage":[65],"robust":[67],"software":[68,147,184],"packages,":[69],"Docker":[70],"containers,":[71],"Description":[75],"Language":[76],"(WDL)":[77],"as":[78],"building":[79],"blocks":[80],"for":[81,158],"standardized,":[82],"Findable,":[83],"Accessible,":[84],"Interoperable,":[85],"Reusable":[86],"(FAIR)":[87],"workflows.":[88],"Over":[89],"past":[91],"five":[92],"years,":[93],"we":[94],"have":[95],"collaborated":[96],"with":[97],"at":[99,115,133],"National":[104,117,126,136],"Microbiome":[105],"Data":[106],"Collaborative":[107],"(NMDC)":[108],"execute":[110],"pipelines":[112],"resources":[114,132],"Research":[119],"Scientific":[120],"Computing":[121],"Facility":[122],"(NERSC),":[123],"Pacific":[124],"Northwest":[125],"Laboratory":[127,137],"(PNNL),":[128],"JGI-owned":[131],"Lawrence":[134],"Berkeley":[135],"(LBNL).":[138],"model":[140],"having":[142],"protocol":[145],"(WDL),":[146],"environment":[148],"(Docker":[149],"container),":[150],"input":[152],"has":[154,161,178],"worked":[155],"incredibly":[156],"well":[157],"users.":[159],"been":[162],"able":[163],"scale":[165],"support":[167],"thousands":[168],"jobs,":[170],"effort":[173],"standardize":[175],"yielded":[179],"significant":[180],"performance":[181],"improvements.":[182],"open-source":[186],"available":[188],"under":[189],"BSSD":[191],"license.":[192]},"counts_by_year":[],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
