{"id":"https://openalex.org/W2593072283","doi":"https://doi.org/10.1109/escience.2016.7870887","title":"Converting scripts into reproducible workflow research objects","display_name":"Converting scripts into reproducible workflow research objects","publication_year":2016,"publication_date":"2016-10-01","ids":{"openalex":"https://openalex.org/W2593072283","doi":"https://doi.org/10.1109/escience.2016.7870887","mag":"2593072283"},"language":"en","primary_location":{"id":"doi:10.1109/escience.2016.7870887","is_oa":false,"landing_page_url":"https://doi.org/10.1109/escience.2016.7870887","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 12th International Conference on e-Science (e-Science)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091843687","display_name":"Lucas Carvalho","orcid":"https://orcid.org/0000-0002-2412-7183"},"institutions":[{"id":"https://openalex.org/I56435720","display_name":"Universit\u00e9 Paris Dauphine-PSL","ror":"https://ror.org/052bz7812","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580","https://openalex.org/I56435720"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Lucas A. M. C. Carvalho","raw_affiliation_strings":["LAMSADE Paris-Dauphine, University Paris, France"],"affiliations":[{"raw_affiliation_string":"LAMSADE Paris-Dauphine, University Paris, France","institution_ids":["https://openalex.org/I56435720"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035816930","display_name":"Khalid Belhajjame","orcid":"https://orcid.org/0000-0001-6938-0820"},"institutions":[{"id":"https://openalex.org/I56435720","display_name":"Universit\u00e9 Paris Dauphine-PSL","ror":"https://ror.org/052bz7812","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580","https://openalex.org/I56435720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Khalid Belhajjame","raw_affiliation_strings":["LAMSADE Paris-Dauphine, University Paris, France"],"affiliations":[{"raw_affiliation_string":"LAMSADE Paris-Dauphine, University Paris, France","institution_ids":["https://openalex.org/I56435720"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024361328","display_name":"Cl\u00e1udia Bauzer Medeiros","orcid":"https://orcid.org/0000-0003-1908-4753"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Claudia Bauzer Medeiros","raw_affiliation_strings":["Institute of Computing, University of Campinas Campinas, Brazil"],"affiliations":[{"raw_affiliation_string":"Institute of Computing, University of Campinas Campinas, Brazil","institution_ids":["https://openalex.org/I181391015"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5091843687"],"corresponding_institution_ids":["https://openalex.org/I56435720"],"apc_list":null,"apc_paid":null,"fwci":5.3176,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.95852663,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"71","last_page":"80"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.885462760925293},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8605996370315552},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8358662128448486},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.7143667936325073},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.6686151027679443},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6650955677032471},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5319725871086121},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.4928624629974365},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4626942574977875},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.4189450740814209},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.41585487127304077},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3403714895248413},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.21672594547271729}],"concepts":[{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.885462760925293},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8605996370315552},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8358662128448486},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.7143667936325073},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.6686151027679443},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6650955677032471},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5319725871086121},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.4928624629974365},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4626942574977875},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.4189450740814209},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.41585487127304077},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3403714895248413},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.21672594547271729},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/escience.2016.7870887","is_oa":false,"landing_page_url":"https://doi.org/10.1109/escience.2016.7870887","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 12th International Conference on e-Science (e-Science)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W269919247","https://openalex.org/W1462378553","https://openalex.org/W1545590260","https://openalex.org/W1802483710","https://openalex.org/W1906647448","https://openalex.org/W1966590642","https://openalex.org/W2013434113","https://openalex.org/W2066458718","https://openalex.org/W2077579791","https://openalex.org/W2088351838","https://openalex.org/W2138123895","https://openalex.org/W2146054955","https://openalex.org/W2152144114","https://openalex.org/W2159721641","https://openalex.org/W2164516301","https://openalex.org/W2262748876","https://openalex.org/W6609951739","https://openalex.org/W6628674272","https://openalex.org/W6638402047","https://openalex.org/W6693229574"],"related_works":["https://openalex.org/W2331989206","https://openalex.org/W3173828731","https://openalex.org/W66419302","https://openalex.org/W45658120","https://openalex.org/W3023169329","https://openalex.org/W4389470870","https://openalex.org/W2782165897","https://openalex.org/W2008612003","https://openalex.org/W613088223","https://openalex.org/W1582950852"],"abstract_inverted_index":{"Scientific":[0],"discovery":[1],"and":[2,7,16,30,95,165,179],"analysis":[3,110],"are":[4,18,36],"increasingly":[5],"computational":[6],"data-driven.":[8],"While":[9],"scripting":[10],"languages,":[11],"such":[12],"as":[13],"Python,":[14],"R":[15],"Perl,":[17],"the":[19,24,62,108,113,117,121,172,180,193],"means":[20],"of":[21,23,26,64,98,195],"choice":[22],"majority":[25],"scientists":[27],"to":[28,40,106],"encode":[29],"run":[31,116],"their":[32,99],"data":[33,109],"analysis,":[34],"scripts":[35,65,143],"generally":[37],"not":[38],"amenable":[39],"reuse":[41],"or":[42,49,123,126],"reproducibility.":[43],"Scripts":[44],"do":[45],"rarely":[46],"get":[47],"reused":[48],"even":[50,127],"shared":[51],"with":[52],"third":[53,103],"party":[54,104],"scientists.":[55],"We":[56],"argue":[57],"in":[58,148,174],"this":[59,135,159],"paper":[60],"that":[61,88,155,167],"reproducibility":[63],"can":[66],"be":[67],"promoted":[68],"by":[69,91,112,153,171],"converting":[70,142],"them":[71],"into":[72,83,144],"workflow":[73,77,87,119,145],"research":[74,78,146],"objects.":[75],"A":[76],"object":[79],"encodes":[80],"a":[81,84,131,139,149,187],"script":[82],"production":[85],"(executable)":[86],"is":[89,184],"accompanied":[90],"annotations,":[92],"example":[93],"datasets":[94],"provenance":[96],"traces":[97],"execution,":[100],"thereby":[101],"allowing":[102],"users":[105],"understand":[107],"encoded":[111],"original":[114],"script,":[115],"associated":[118],"using":[120,186],"same":[122],"different":[124,132],"dataset,":[125],"repurpose":[128],"it":[129],"for":[130,141,158],"analysis.":[133],"To":[134],"end,":[136],"we":[137,156],"present":[138],"methodology":[140,162],"objects":[147],"principled":[150],"manner,":[151],"guided":[152],"requirements":[154],"elicited":[157],"purpose.":[160],"The":[161],"exploits":[163],"tools":[164],"standards":[166],"have":[168],"been":[169],"developed":[170],"community,":[173],"particular":[175],"YesWorkflow,":[176],"Research":[177],"Objects":[178],"W3C":[181],"PROV.":[182],"It":[183],"showcased":[185],"real":[188],"world":[189],"use":[190],"case":[191],"from":[192],"field":[194],"Molecular":[196],"Dynamics.":[197]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
