{"id":"https://openalex.org/W2592868829","doi":"https://doi.org/10.1109/escience.2016.7870886","title":"PRUNE: A preserving run environment for reproducible scientific computing","display_name":"PRUNE: A preserving run environment for reproducible scientific computing","publication_year":2016,"publication_date":"2016-10-01","ids":{"openalex":"https://openalex.org/W2592868829","doi":"https://doi.org/10.1109/escience.2016.7870886","mag":"2592868829"},"language":"en","primary_location":{"id":"doi:10.1109/escience.2016.7870886","is_oa":false,"landing_page_url":"https://doi.org/10.1109/escience.2016.7870886","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 12th International Conference on e-Science (e-Science)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072434988","display_name":"Peter Ivie","orcid":"https://orcid.org/0000-0002-6473-1801"},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Peter Ivie","raw_affiliation_strings":["University of Notre Dame"],"affiliations":[{"raw_affiliation_string":"University of Notre Dame","institution_ids":["https://openalex.org/I107639228"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007301255","display_name":"Douglas Thain","orcid":"https://orcid.org/0000-0001-5218-1956"},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Douglas Thain","raw_affiliation_strings":["University of Notre Dame"],"affiliations":[{"raw_affiliation_string":"University of Notre Dame","institution_ids":["https://openalex.org/I107639228"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5072434988"],"corresponding_institution_ids":["https://openalex.org/I107639228"],"apc_list":null,"apc_paid":null,"fwci":3.5451,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.94385445,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"61","last_page":"70"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/distrust","display_name":"Distrust","score":0.8358964323997498},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8313748836517334},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6976356506347656},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6933401226997375},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6831761598587036},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5029742121696472},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4720279276371002},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.45832645893096924},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.31357085704803467},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2076837122440338}],"concepts":[{"id":"https://openalex.org/C2778321746","wikidata":"https://www.wikidata.org/wiki/Q621922","display_name":"Distrust","level":2,"score":0.8358964323997498},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8313748836517334},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6976356506347656},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6933401226997375},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6831761598587036},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5029742121696472},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4720279276371002},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.45832645893096924},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.31357085704803467},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2076837122440338},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/escience.2016.7870886","is_oa":false,"landing_page_url":"https://doi.org/10.1109/escience.2016.7870886","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 12th International Conference on e-Science (e-Science)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W509898","https://openalex.org/W71388611","https://openalex.org/W1229457308","https://openalex.org/W1480850417","https://openalex.org/W1492828095","https://openalex.org/W1494237667","https://openalex.org/W1519734008","https://openalex.org/W1659560869","https://openalex.org/W1767470961","https://openalex.org/W1893864409","https://openalex.org/W1981165529","https://openalex.org/W1984484365","https://openalex.org/W1994718921","https://openalex.org/W2029084939","https://openalex.org/W2031194666","https://openalex.org/W2032549894","https://openalex.org/W2047321993","https://openalex.org/W2077579791","https://openalex.org/W2083558913","https://openalex.org/W2129666400","https://openalex.org/W2136609678","https://openalex.org/W2137653635","https://openalex.org/W2144296776","https://openalex.org/W2144981148","https://openalex.org/W2148238464","https://openalex.org/W2161645441","https://openalex.org/W2236864648","https://openalex.org/W2296335794","https://openalex.org/W2469206802","https://openalex.org/W2540151287","https://openalex.org/W2758409057","https://openalex.org/W2804603222","https://openalex.org/W2912412735","https://openalex.org/W3008177833","https://openalex.org/W4230625563","https://openalex.org/W4250106230","https://openalex.org/W6602838686","https://openalex.org/W6628053425","https://openalex.org/W6628668578","https://openalex.org/W6630955662","https://openalex.org/W6637181491","https://openalex.org/W6658211395","https://openalex.org/W6689454691","https://openalex.org/W6697144307","https://openalex.org/W6720237800","https://openalex.org/W6744542489","https://openalex.org/W6758979328"],"related_works":["https://openalex.org/W199727279","https://openalex.org/W2152370238","https://openalex.org/W3160132286","https://openalex.org/W3193570178","https://openalex.org/W2136955267","https://openalex.org/W2712460288","https://openalex.org/W2016002482","https://openalex.org/W2352717624","https://openalex.org/W2364471629","https://openalex.org/W2145844491"],"abstract_inverted_index":{"Computing":[0],"as":[1],"a":[2,6,86,92,111,117],"whole":[3],"suffers":[4],"from":[5],"crisis":[7],"of":[8,32,39,122,129,150,163],"reproducibility.":[9,109],"Programs":[10],"executed":[11,82,100],"in":[12,20,24,43,85,115,132,169,175],"one":[13],"context":[14],"are":[15,58],"astonishingly":[16],"hard":[17],"to":[18,80,107],"reproduce":[19],"another":[21],"context,":[22],"resulting":[23],"wasted":[25],"effort":[26],"by":[27,35,61,101],"people":[28],"and":[29,54,89,141,159,165,172],"general":[30],"distrust":[31],"results":[33],"produced":[34],"computer.":[36],"The":[37,96,127],"root":[38],"the":[40,44,62,72,105,133,156,160],"problem":[41],"lies":[42],"fact":[45],"that":[46],"every":[47,78,130],"program":[48],"has":[49],"implicit":[50],"dependencies":[51],"on":[52],"data":[53,124],"execution":[55],"environment":[56],"which":[57],"rarely":[59],"understood":[60],"end":[63],"user.":[64],"To":[65],"address":[66],"this":[67],"problem,":[68],"we":[69],"present":[70,155],"PRUNE,":[71,77,116,164],"Preserving":[73],"Run":[74],"Environment.":[75],"In":[76],"task":[79,97],"be":[81,136],"is":[83,98,125],"wrapped":[84],"functional":[87],"interface":[88,158],"coupled":[90],"with":[91,147],"strictly":[93],"defined":[94],"environment.":[95],"then":[99],"PRUNE":[102],"rather":[103],"than":[104],"user":[106,157],"ensure":[108],"As":[110],"scientific":[112],"workflow":[113],"evolves":[114],"growing":[118],"but":[119],"immutable":[120],"tree":[121],"derived":[123],"created.":[126],"provenance":[128],"item":[131],"system":[134],"can":[135],"precisely":[137],"described,":[138],"facilitating":[139],"sharing":[140],"modification":[142],"between":[143],"collaborating":[144],"researchers,":[145],"along":[146],"efficient":[148],"management":[149],"limited":[151],"storage":[152],"space.":[153],"We":[154],"initial":[161],"prototype":[162],"demonstrate":[166],"its":[167],"application":[168],"matching":[170],"records":[171],"comparing":[173],"surnames":[174],"U.S.":[176],"Censuses.":[177]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
