{"id":"https://openalex.org/W2020446534","doi":"https://doi.org/10.1109/escience.2012.6404412","title":"RightField: Semantic enrichment of Systems Biology data using spreadsheets","display_name":"RightField: Semantic enrichment of Systems Biology data using spreadsheets","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W2020446534","doi":"https://doi.org/10.1109/escience.2012.6404412","mag":"2020446534"},"language":"en","primary_location":{"id":"doi:10.1109/escience.2012.6404412","is_oa":false,"landing_page_url":"https://doi.org/10.1109/escience.2012.6404412","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 8th International Conference on E-Science","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pure.manchester.ac.uk/ws/files/216526479/e_science_final_wolstencroft2.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087859284","display_name":"Katherine Wolstencroft","orcid":"https://orcid.org/0000-0002-1279-5133"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Katherine Wolstencroft","raw_affiliation_strings":["School of Computer Science, University of Manchester, Kilburn Building, Manchester, UK","School of Computer Science University of Manchester Kilburn Building Oxford Road Manchester UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Kilburn Building, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science University of Manchester Kilburn Building Oxford Road Manchester UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022818385","display_name":"Stuart Owen","orcid":"https://orcid.org/0000-0003-2130-0865"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stuart Owen","raw_affiliation_strings":["School of Computer Science, University of Manchester, Kilburn Building, Manchester, UK","School of Computer Science University of Manchester Kilburn Building Oxford Road Manchester UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Kilburn Building, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science University of Manchester Kilburn Building Oxford Road Manchester UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027899893","display_name":"Carole Goble","orcid":"https://orcid.org/0000-0003-1219-2137"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Carole Goble","raw_affiliation_strings":["School of Computer Science, University of Manchester, Kilburn Building, Manchester, UK","School of Computer Science University of Manchester Kilburn Building Oxford Road Manchester UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Kilburn Building, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science University of Manchester Kilburn Building Oxford Road Manchester UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044621619","display_name":"Quyen Le Hoang Thuy To Nguyen","orcid":"https://orcid.org/0000-0001-9254-2605"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Quyen Nguyen","raw_affiliation_strings":["Heidelberg Institute of Theoretical Studies gGmbH, Schlo\u00df, Heidelberg, Germany","Heidelberg Institute of Theoretical Studies gGmbH, Schlo\u00df-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Heidelberg Institute of Theoretical Studies gGmbH, Schlo\u00df, Heidelberg, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"Heidelberg Institute of Theoretical Studies gGmbH, Schlo\u00df-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042243911","display_name":"Olga Krebs","orcid":"https://orcid.org/0000-0003-3540-0402"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Olga Krebs","raw_affiliation_strings":["Heidelberg Institute of Theoretical Studies gGmbH, Schlo\u00df, Heidelberg, Germany","Heidelberg Institute of Theoretical Studies gGmbH, Schlo\u00df-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Heidelberg Institute of Theoretical Studies gGmbH, Schlo\u00df, Heidelberg, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"Heidelberg Institute of Theoretical Studies gGmbH, Schlo\u00df-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060937863","display_name":"Wolfgang G. M\u00fcller","orcid":"https://orcid.org/0000-0002-4980-3512"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wolfgang Muller","raw_affiliation_strings":["Heidelberg Institute of Theoretical Studies gGmbH, Schlo\u00df, Heidelberg, Germany","Heidelberg Institute of Theoretical Studies gGmbH, Schlo\u00df-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Heidelberg Institute of Theoretical Studies gGmbH, Schlo\u00df, Heidelberg, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"Heidelberg Institute of Theoretical Studies gGmbH, Schlo\u00df-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany","institution_ids":["https://openalex.org/I71030271"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"500","issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.89076167345047},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8204673528671265},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.678841769695282},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6573549509048462},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.650738000869751},{"id":"https://openalex.org/keywords/metadata-repository","display_name":"Metadata repository","score":0.5887129306793213},{"id":"https://openalex.org/keywords/data-element","display_name":"Data element","score":0.5178935527801514},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5057547092437744},{"id":"https://openalex.org/keywords/data-mapping","display_name":"Data mapping","score":0.457397997379303},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.4436625838279724},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.4238671660423279},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.41213753819465637},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.39364859461784363},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3322465121746063},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09175720810890198}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.89076167345047},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8204673528671265},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.678841769695282},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6573549509048462},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.650738000869751},{"id":"https://openalex.org/C153048206","wikidata":"https://www.wikidata.org/wiki/Q3454922","display_name":"Metadata repository","level":3,"score":0.5887129306793213},{"id":"https://openalex.org/C30872290","wikidata":"https://www.wikidata.org/wiki/Q1172389","display_name":"Data element","level":3,"score":0.5178935527801514},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5057547092437744},{"id":"https://openalex.org/C137314826","wikidata":"https://www.wikidata.org/wiki/Q2330408","display_name":"Data mapping","level":2,"score":0.457397997379303},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.4436625838279724},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.4238671660423279},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.41213753819465637},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.39364859461784363},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3322465121746063},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09175720810890198}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/escience.2012.6404412","is_oa":false,"landing_page_url":"https://doi.org/10.1109/escience.2012.6404412","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 8th International Conference on E-Science","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/f87c2108-d16a-4728-b2ba-8a7bb95e84ff","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/f87c2108-d16a-4728-b2ba-8a7bb95e84ff","pdf_url":"https://pure.manchester.ac.uk/ws/files/216526479/e_science_final_wolstencroft2.pdf","source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wolstencroft, K, Owen, S, Goble, C, Nguyen, Q, Krebs, O & M\u00fcller, W 2012, RightField: Semantic enrichment of systems biology data using spreadsheets. in 2012 IEEE 8th International Conference on E-Science, e-Science 2012|IEEE Int. Conf. E-Sci., e-Science. 2012 IEEE 8th International Conference on E-Science, e-Science 2012, Chicago, IL, 1/07/12. https://doi.org/10.1109/eScience.2012.6404412","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:pure.atira.dk:publications/f87c2108-d16a-4728-b2ba-8a7bb95e84ff","is_oa":true,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/rightfield-semantic-enrichment-of-systems-biology-data-using-spreadsheets(f87c2108-d16a-4728-b2ba-8a7bb95e84ff).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/f87c2108-d16a-4728-b2ba-8a7bb95e84ff","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/f87c2108-d16a-4728-b2ba-8a7bb95e84ff","pdf_url":"https://pure.manchester.ac.uk/ws/files/216526479/e_science_final_wolstencroft2.pdf","source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wolstencroft, K, Owen, S, Goble, C, Nguyen, Q, Krebs, O & M\u00fcller, W 2012, RightField: Semantic enrichment of systems biology data using spreadsheets. in 2012 IEEE 8th International Conference on E-Science, e-Science 2012|IEEE Int. Conf. E-Sci., e-Science. 2012 IEEE 8th International Conference on E-Science, e-Science 2012, Chicago, IL, 1/07/12. https://doi.org/10.1109/eScience.2012.6404412","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5918933644","display_name":"SysMO-DB2","funder_award_id":"BB/I004637/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G744749362","display_name":null,"funder_award_id":"BB/I004637/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2020446534.pdf","grobid_xml":"https://content.openalex.org/works/W2020446534.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1480017700","https://openalex.org/W1527927437","https://openalex.org/W1544923801","https://openalex.org/W1979449560","https://openalex.org/W1986409020","https://openalex.org/W2008535044","https://openalex.org/W2019543926","https://openalex.org/W2033377040","https://openalex.org/W2050554833","https://openalex.org/W2061476066","https://openalex.org/W2091729411","https://openalex.org/W2107572678","https://openalex.org/W2128763542","https://openalex.org/W2130430745","https://openalex.org/W2136704415","https://openalex.org/W2141297584","https://openalex.org/W2143129697","https://openalex.org/W2150908245","https://openalex.org/W2165428180","https://openalex.org/W2165685472","https://openalex.org/W6631571063"],"related_works":["https://openalex.org/W2183628870","https://openalex.org/W2379265733","https://openalex.org/W4293519456","https://openalex.org/W3199469221","https://openalex.org/W2545809202","https://openalex.org/W3016521766","https://openalex.org/W2362378919","https://openalex.org/W2347306054","https://openalex.org/W1927820993","https://openalex.org/W1503116306"],"abstract_inverted_index":{"The":[0,116],"interpretation":[1],"and":[2,11,31,54,61,110,124],"integration":[3,57],"of":[4,22,33,50,73,81,105],"experimental":[5],"data":[6,56,64,107],"depends":[7],"on":[8],"consistent":[9],"metadata":[10,52],"uniform":[12],"annotation.":[13],"However,":[14],"there":[15],"are":[16],"many":[17],"barriers":[18],"to":[19],"the":[20,29,48,71,79,90,95,102,125,131],"acquisition":[21],"this":[23],"rich":[24,82],"semantic":[25,74,106],"metadata,":[26,83],"not":[27],"least":[28],"overhead":[30],"complexity":[32],"its":[34],"collection":[35,80],"by":[36,86],"scientists.":[37,87],"We":[38,88],"present":[39],"RightField,":[40],"a":[41,55],"lightweight":[42],"spreadsheet-based":[43],"annotation":[44],"tool":[45,118],"for":[46,59],"lowering":[47],"barrier":[49],"manual":[51],"acquisition;":[53],"application":[58],"extracting":[60],"querying":[62,112],"RDF":[63,111],"from":[65,94,122],"these":[66],"enriched":[67],"spreadsheets.":[68],"By":[69],"hiding":[70],"complexities":[72],"annotation,":[75],"we":[76],"can":[77],"improve":[78],"at":[84],"source,":[85],"illustrate":[89],"approach":[91],"with":[92],"results":[93],"SysMO":[96],"program,":[97],"showing":[98],"that":[99],"RightField":[100,117],"supports":[101],"whole":[103],"workflow":[104],"collection,":[108],"submission":[109],"in":[113],"Systems":[114],"Biology.":[115],"is":[119,127],"freely":[120],"available":[121],"http://www.rightfield.org.uk,":[123],"code":[126],"open":[128],"source":[129],"under":[130],"BSD":[132],"License.":[133]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
