{"id":"https://openalex.org/W2115348070","doi":"https://doi.org/10.1109/enc.2004.1342630","title":"Parallel DNA sequence assembly","display_name":"Parallel DNA sequence assembly","publication_year":2004,"publication_date":"2004-01-01","ids":{"openalex":"https://openalex.org/W2115348070","doi":"https://doi.org/10.1109/enc.2004.1342630","mag":"2115348070"},"language":"en","primary_location":{"id":"doi:10.1109/enc.2004.1342630","is_oa":false,"landing_page_url":"https://doi.org/10.1109/enc.2004.1342630","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Fifth Mexican International Conference in Computer Science, 2004. ENC 2004.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024504556","display_name":"Jacek B\u0142a\u017cewicz","orcid":"https://orcid.org/0000-0001-8326-1094"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"J. Blazewicz","raw_affiliation_strings":["Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland","Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","Institute of Computer Science, Poznan University of Technology, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland","institution_ids":["https://openalex.org/I4210152414"]},{"raw_affiliation_string":"Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Institute of Computer Science, Poznan University of Technology, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019431640","display_name":"Marek Figlerowicz","orcid":"https://orcid.org/0000-0002-6392-0192"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"funder","lineage":["https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"M. Figlerowicz","raw_affiliation_strings":["Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland",", Polish Academy of Sciences"],"affiliations":[{"raw_affiliation_string":"Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland","institution_ids":["https://openalex.org/I4210152414"]},{"raw_affiliation_string":", Polish Academy of Sciences","institution_ids":["https://openalex.org/I99542240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024727634","display_name":"Paulina Jackowiak","orcid":"https://orcid.org/0000-0003-4067-6788"},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"P. Jackowiak","raw_affiliation_strings":["Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","Poznan University of Technology"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Poznan University of Technology","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012105276","display_name":"D. Janny","orcid":null},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"D. Janny","raw_affiliation_strings":["Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","Poznan University of Technology"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Poznan University of Technology","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030387560","display_name":"D. Jarczynski","orcid":null},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"D. Jarczynski","raw_affiliation_strings":["Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","Poznan University of Technology"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Poznan University of Technology","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036768913","display_name":"Marta Kasprzak","orcid":"https://orcid.org/0000-0002-9863-5412"},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]},{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"M. Kasprzak","raw_affiliation_strings":["Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland","Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","Pozna\u0144 University of Technology and Polish Academy of Sciences"],"affiliations":[{"raw_affiliation_string":"Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland","institution_ids":["https://openalex.org/I4210152414"]},{"raw_affiliation_string":"Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Pozna\u0144 University of Technology and Polish Academy of Sciences","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035435452","display_name":"M. Nalewaj","orcid":null},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"M. Nalewaj","raw_affiliation_strings":["Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","Poznan University of Technology"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Poznan University of Technology","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017893798","display_name":"Bartosz Nowierski","orcid":null},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"B. Nowierski","raw_affiliation_strings":["Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","Poznan University of Technology"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Poznan University of Technology","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005301964","display_name":"Rafa\u0142 Styszy\u0144ski","orcid":null},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"R. Styszynski","raw_affiliation_strings":["Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","Poznan University of Technology"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Poznan University of Technology","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014371925","display_name":"Lukasz Szajkowski","orcid":null},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"L. Szajkowski","raw_affiliation_strings":["Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","Poznan University of Technology"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Poznan University of Technology","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023340828","display_name":"Paw\u0142 Widera","orcid":null},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"P. Widera","raw_affiliation_strings":["Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","Poznan University of Technology"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Science, Pozna\u0144 University of Technology, Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Poznan University of Technology","institution_ids":["https://openalex.org/I46597724"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5024504556"],"corresponding_institution_ids":["https://openalex.org/I4210152414","https://openalex.org/I46597724"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.12156261,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"378","last_page":"382"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7201784253120422},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6515514850616455},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.5980744957923889},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5723785161972046},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.49806857109069824},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18059977889060974},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07879811525344849}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7201784253120422},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6515514850616455},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5980744957923889},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5723785161972046},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.49806857109069824},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18059977889060974},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07879811525344849},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/enc.2004.1342630","is_oa":false,"landing_page_url":"https://doi.org/10.1109/enc.2004.1342630","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Fifth Mexican International Conference in Computer Science, 2004. ENC 2004.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W36877266","https://openalex.org/W1490430289","https://openalex.org/W1589993665","https://openalex.org/W1600463518","https://openalex.org/W1974908481","https://openalex.org/W1981014117","https://openalex.org/W2011039300","https://openalex.org/W2041397659"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"A":[0,22],"heuristic":[1],"algorithm":[2,29,55],"for":[3],"the":[4,27,44,51],"DNA":[5],"sequence":[6],"assembly":[7],"problem":[8],"is":[9,14],"presented.":[10],"Its":[11],"sequential":[12],"implementation":[13],"described":[15],"as":[16,18],"well":[17],"its":[19],"parallelization":[20],"method.":[21],"computational":[23],"experiment":[24],"shows":[25],"how":[26],"parallel":[28],"speed":[30],"depends":[31],"on":[32,38],"a":[33],"number":[34],"of":[35,53],"processes.":[36],"Tests":[37],"real":[39],"data":[40],"from":[41],"experiments":[42],"with":[43],"SARS":[45],"coronavirus":[46],"are":[47],"also":[48],"discussed,":[49],"and":[50],"outcome":[52],"our":[54],"appears":[56],"to":[57],"be":[58],"biologically":[59],"correct.":[60]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
