{"id":"https://openalex.org/W2923935359","doi":"https://doi.org/10.1109/empdp.2019.8671629","title":"OneGenE: Regulatory Gene Network Expansion via Distributed Volunteer Computing on BOINC","display_name":"OneGenE: Regulatory Gene Network Expansion via Distributed Volunteer Computing on BOINC","publication_year":2019,"publication_date":"2019-02-01","ids":{"openalex":"https://openalex.org/W2923935359","doi":"https://doi.org/10.1109/empdp.2019.8671629","mag":"2923935359"},"language":"en","primary_location":{"id":"doi:10.1109/empdp.2019.8671629","is_oa":false,"landing_page_url":"https://doi.org/10.1109/empdp.2019.8671629","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023870348","display_name":"Francesco Asnicar","orcid":"https://orcid.org/0000-0003-3732-1468"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesco Asnicar","raw_affiliation_strings":["Department of Information Engineering and Computer Science, University of Trento, Trento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Engineering and Computer Science, University of Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015906490","display_name":"Luca Masera","orcid":"https://orcid.org/0000-0001-9734-4202"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luca Masera","raw_affiliation_strings":["Department of Information Engineering and Computer Science, University of Trento, Trento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Engineering and Computer Science, University of Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086032716","display_name":"Davide Pistore","orcid":null},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Davide Pistore","raw_affiliation_strings":["Department of Information Engineering and Computer Science, University of Trento, Trento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Engineering and Computer Science, University of Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054443624","display_name":"Samuel Valentini","orcid":"https://orcid.org/0000-0003-3656-8274"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Samuel Valentini","raw_affiliation_strings":["CIBIO, University of Trento, Trento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIBIO, University of Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083078475","display_name":"Valter Cavecchia","orcid":null},"institutions":[{"id":"https://openalex.org/I4210096308","display_name":"Institute of Materials for Electronics and Magnetism","ror":"https://ror.org/00z8ws214","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210096308","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Valter Cavecchia","raw_affiliation_strings":["IMEM - CNR, Institute of Materials for Electronics and Magnetism, Trento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IMEM - CNR, Institute of Materials for Electronics and Magnetism, Trento, Italy","institution_ids":["https://openalex.org/I4210096308"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020235155","display_name":"Enrico Blanzieri","orcid":"https://orcid.org/0000-0001-6524-0601"},"institutions":[{"id":"https://openalex.org/I4210096308","display_name":"Institute of Materials for Electronics and Magnetism","ror":"https://ror.org/00z8ws214","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210096308","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Enrico Blanzieri","raw_affiliation_strings":["IMEM - CNR, Institute of Materials for Electronics and Magnetism, Trento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IMEM - CNR, Institute of Materials for Electronics and Magnetism, Trento, Italy","institution_ids":["https://openalex.org/I4210096308"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2486,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.54078383,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"62","issue":null,"first_page":"315","last_page":"322"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.7068190574645996},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6517896056175232},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5742215514183044},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5237036943435669},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.45940935611724854},{"id":"https://openalex.org/keywords/regulator-gene","display_name":"Regulator gene","score":0.41341888904571533},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4089939594268799},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.3521748185157776},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26296770572662354},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2139779031276703},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1797894537448883},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07816842198371887}],"concepts":[{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.7068190574645996},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6517896056175232},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5742215514183044},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5237036943435669},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.45940935611724854},{"id":"https://openalex.org/C33498276","wikidata":"https://www.wikidata.org/wiki/Q2138797","display_name":"Regulator gene","level":4,"score":0.41341888904571533},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4089939594268799},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.3521748185157776},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26296770572662354},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2139779031276703},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1797894537448883},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07816842198371887},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/empdp.2019.8671629","is_oa":false,"landing_page_url":"https://doi.org/10.1109/empdp.2019.8671629","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP)","raw_type":"proceedings-article"},{"id":"pmh:oai:iris.unitn.it:11572/235624","is_oa":false,"landing_page_url":"http://hdl.handle.net/11572/235624","pdf_url":null,"source":{"id":"https://openalex.org/S4306401913","display_name":"Institutional Research Information System (Universit\u00e0 degli Studi di Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.46000000834465027}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W93405014","https://openalex.org/W602980269","https://openalex.org/W1529940414","https://openalex.org/W1573602524","https://openalex.org/W1903990541","https://openalex.org/W1942549872","https://openalex.org/W1975062332","https://openalex.org/W1990930479","https://openalex.org/W2024990640","https://openalex.org/W2025853734","https://openalex.org/W2033849847","https://openalex.org/W2051834357","https://openalex.org/W2053550394","https://openalex.org/W2120379285","https://openalex.org/W2122708083","https://openalex.org/W2127539199","https://openalex.org/W2142170851","https://openalex.org/W2142863519","https://openalex.org/W2143891888","https://openalex.org/W2146511318","https://openalex.org/W2155573334","https://openalex.org/W2166816492","https://openalex.org/W2176431433","https://openalex.org/W2187166075","https://openalex.org/W2396961413","https://openalex.org/W2514090652","https://openalex.org/W2588657365","https://openalex.org/W2620966921","https://openalex.org/W2890871828","https://openalex.org/W2895842572","https://openalex.org/W2911208296","https://openalex.org/W2914129560","https://openalex.org/W3006419771","https://openalex.org/W3117540822","https://openalex.org/W3190841117","https://openalex.org/W6683167872","https://openalex.org/W6712351465","https://openalex.org/W6738674058","https://openalex.org/W6757958943","https://openalex.org/W6759070178"],"related_works":["https://openalex.org/W2010571965","https://openalex.org/W2002709996","https://openalex.org/W2277277196","https://openalex.org/W2043274041","https://openalex.org/W2107149076","https://openalex.org/W2620422757","https://openalex.org/W1969499963","https://openalex.org/W1538019557","https://openalex.org/W2167190345","https://openalex.org/W2294194070"],"abstract_inverted_index":{"Gene":[0],"regulatory":[1,26,39,104],"network":[2,40],"expansion":[3,41,77,97],"is":[4,49],"a":[5,22,34,100,127],"task":[6],"of":[7,52,113],"the":[8,45,53,57,69,85,94,95,110,120],"foremost":[9],"importance":[10],"in":[11,84],"computational":[12],"biology":[13],"that":[14,42],"aims":[15],"at":[16,90],"finding":[17],"new":[18],"genes":[19],"to":[20,59,92],"expand":[21],"given":[23,101],"known":[24,102],"gene":[25,38,83,103],"network.":[27,105],"To":[28,72],"this":[29,74],"end":[30],"we":[31],"present":[32],"OneGenE,":[33],"novel":[35],"framework":[36],"for":[37,68,81,99],"relies":[43],"on":[44,109],"BOINC":[46],"platform.":[47],"OneGenE":[48,108],"an":[50],"evolution":[51],"NES2RA":[54,124],"algorithm,":[55],"with":[56,119],"aim":[58],"overcome":[60],"its":[61,117],"main":[62],"criticality,":[63],"i.e.":[64],"long":[65],"response":[66],"time":[67],"final":[70,96],"user.":[71],"achieve":[73],"goal,":[75],"candidate":[76],"lists":[78],"are":[79],"pre-computed":[80],"each":[82],"organism":[86],"and":[87,125],"then":[88],"aggregated":[89],"runtime":[91],"produce":[93],"list":[98],"We":[106],"validated":[107],"expression":[111],"data":[112],"Pseudomonas":[114],"aeruginosa,":[115],"comparing":[116],"results":[118],"one":[121],"obtained":[122],"by":[123],"through":[126],"biological":[128],"literature":[129],"review.":[130]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}