{"id":"https://openalex.org/W4405489500","doi":"https://doi.org/10.1109/embc53108.2024.10782766","title":"BCAT2 Expression in IDC Breast Cancer subtypes: A Weighted Feature-Based Approach to Identify and Rank Associated Genes Across Public Datasets","display_name":"BCAT2 Expression in IDC Breast Cancer subtypes: A Weighted Feature-Based Approach to Identify and Rank Associated Genes Across Public Datasets","publication_year":2024,"publication_date":"2024-07-15","ids":{"openalex":"https://openalex.org/W4405489500","doi":"https://doi.org/10.1109/embc53108.2024.10782766","pmid":"https://pubmed.ncbi.nlm.nih.gov/40039929"},"language":"en","primary_location":{"id":"doi:10.1109/embc53108.2024.10782766","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc53108.2024.10782766","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072658722","display_name":"Rukhsana Rukhsana","orcid":null},"institutions":[{"id":"https://openalex.org/I4210123711","display_name":"Derby College","ror":"https://ror.org/02q4zda14","country_code":"GB","type":"education","lineage":["https://openalex.org/I4210123711"]},{"id":"https://openalex.org/I22128151","display_name":"University of Derby","ror":"https://ror.org/02yhrrk59","country_code":"GB","type":"education","lineage":["https://openalex.org/I22128151"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Rukhsana","raw_affiliation_strings":["University of Derby,College of Sciences and Engineering,Derby,UK,DE22 1GB"],"affiliations":[{"raw_affiliation_string":"University of Derby,College of Sciences and Engineering,Derby,UK,DE22 1GB","institution_ids":["https://openalex.org/I22128151","https://openalex.org/I4210123711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003544564","display_name":"Wajahat Ali Khan","orcid":"https://orcid.org/0000-0003-4118-7855"},"institutions":[{"id":"https://openalex.org/I4210123711","display_name":"Derby College","ror":"https://ror.org/02q4zda14","country_code":"GB","type":"education","lineage":["https://openalex.org/I4210123711"]},{"id":"https://openalex.org/I22128151","display_name":"University of Derby","ror":"https://ror.org/02yhrrk59","country_code":"GB","type":"education","lineage":["https://openalex.org/I22128151"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Wajahat Ali Khan","raw_affiliation_strings":["University of Derby,College of Sciences and Engineering,Derby,UK,DE22 1GB"],"affiliations":[{"raw_affiliation_string":"University of Derby,College of Sciences and Engineering,Derby,UK,DE22 1GB","institution_ids":["https://openalex.org/I22128151","https://openalex.org/I4210123711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065253650","display_name":"Myra E. Conway","orcid":"https://orcid.org/0000-0001-6801-7245"},"institutions":[{"id":"https://openalex.org/I22128151","display_name":"University of Derby","ror":"https://ror.org/02yhrrk59","country_code":"GB","type":"education","lineage":["https://openalex.org/I22128151"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Myra Conway","raw_affiliation_strings":["University of Derby,College of Health, Psychology and Social Care,Derby,UK,DE22 1GB"],"affiliations":[{"raw_affiliation_string":"University of Derby,College of Health, Psychology and Social Care,Derby,UK,DE22 1GB","institution_ids":["https://openalex.org/I22128151"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100698640","display_name":"Young Joo Lee","orcid":"https://orcid.org/0000-0003-1945-1090"},"institutions":[{"id":"https://openalex.org/I28777354","display_name":"Sejong University","ror":"https://ror.org/00aft1q37","country_code":"KR","type":"education","lineage":["https://openalex.org/I28777354"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Young Joo Lee","raw_affiliation_strings":["Sejong University,Dept. of Integrative Bioscience and Biotechnology,Seoul,South Korea"],"affiliations":[{"raw_affiliation_string":"Sejong University,Dept. of Integrative Bioscience and Biotechnology,Seoul,South Korea","institution_ids":["https://openalex.org/I28777354"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057344285","display_name":"Asad Masood Khattak","orcid":"https://orcid.org/0000-0001-9135-8881"},"institutions":[{"id":"https://openalex.org/I91044093","display_name":"Zayed University","ror":"https://ror.org/03snqfa66","country_code":"AE","type":"education","lineage":["https://openalex.org/I91044093"]}],"countries":["AE"],"is_corresponding":false,"raw_author_name":"Asad Masood Khattak","raw_affiliation_strings":["Zayed University,College of Technological Innovation,Abu Dhabi,UAE"],"affiliations":[{"raw_affiliation_string":"Zayed University,College of Technological Innovation,Abu Dhabi,UAE","institution_ids":["https://openalex.org/I91044093"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5072658722"],"corresponding_institution_ids":["https://openalex.org/I22128151","https://openalex.org/I4210123711"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.20454349,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2024","issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.7262428998947144},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.5990140438079834},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5657078623771667},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4934019148349762},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4536832571029663},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4259456694126129},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4181510806083679},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4092521667480469},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4059295654296875},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3411095142364502},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29636043310165405},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19199681282043457},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18814092874526978}],"concepts":[{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.7262428998947144},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.5990140438079834},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5657078623771667},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4934019148349762},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4536832571029663},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4259456694126129},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4181510806083679},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4092521667480469},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4059295654296875},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3411095142364502},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29636043310165405},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19199681282043457},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18814092874526978},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000637","descriptor_name":"Transaminases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000637","descriptor_name":"Transaminases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000637","descriptor_name":"Transaminases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000637","descriptor_name":"Transaminases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000637","descriptor_name":"Transaminases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000637","descriptor_name":"Transaminases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018270","descriptor_name":"Carcinoma, Ductal, Breast","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018270","descriptor_name":"Carcinoma, Ductal, Breast","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018270","descriptor_name":"Carcinoma, Ductal, Breast","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018270","descriptor_name":"Carcinoma, Ductal, Breast","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc53108.2024.10782766","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc53108.2024.10782766","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:40039929","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40039929","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5400000214576721,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W2107178017","https://openalex.org/W2130410032","https://openalex.org/W2149441684","https://openalex.org/W2332230038","https://openalex.org/W2569552930","https://openalex.org/W2802528458","https://openalex.org/W3115451420","https://openalex.org/W4394609016"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2112835755","https://openalex.org/W4405112912","https://openalex.org/W4291951920","https://openalex.org/W2375584271","https://openalex.org/W2392243736","https://openalex.org/W1997105855","https://openalex.org/W2349674371","https://openalex.org/W86652014","https://openalex.org/W2097495471"],"abstract_inverted_index":{"It":[0],"has":[1],"been":[2],"observed":[3,93],"that":[4,15],"breast":[5,83,119],"cancer":[6,48,84],"is":[7,67],"associated":[8,77,106],"with":[9,107],"dysregulation":[10],"of":[11,36,82,118],"several":[12],"metabolic":[13],"pathways":[14],"produce":[16],"metabolite":[17],"addiction,":[18],"such":[19],"as":[20],"the":[21,54,96,109],"dependence":[22],"on":[23],"glutamine":[24],"for":[25],"tumor":[26],"development.":[27],"These":[28,121],"discoveries":[29],"might":[30,104],"be":[31,105],"applied":[32],"to":[33,73,94,127],"personalized":[34],"treatment":[35],"this":[37],"heterogeneous":[38],"illness":[39],"by":[40],"employing":[41],"specific":[42],"gene":[43,101],"expression":[44,91,102],"or":[45],"metabolites":[46],"in":[47,61,115],"therapy.":[49],"BCAT1":[50],"and":[51,75,99,113],"BCAT2":[52,66,89,100],"encode":[53],"human":[55],"branched-chain":[56],"aminotransferase":[57],"proteins":[58],"(hBCAT)":[59],"involved":[60],"cellular":[62],"metabolism":[63],"process.":[64],"Here":[65],"exploited":[68],"through":[69,130],"weighted":[70],"feature-based":[71],"approach":[72],"identify":[74],"rank":[76],"genes":[78],"across":[79],"public":[80],"datasets":[81],"invasive":[85],"ductal":[86],"carcinoma":[87],"patients.":[88],"lower":[90],"was":[92],"have":[95],"worst":[97],"prognosis,":[98],"which":[103],"triggering":[108],"risk,":[110],"are":[111],"ranked,":[112],"visualized":[114],"different":[116],"subtypes":[117],"cancer.":[120],"findings":[122],"give":[123],"a":[124],"strong":[125],"clue":[126],"further":[128],"investigate":[129],"experimental":[131],"approach.":[132]},"counts_by_year":[],"updated_date":"2026-04-06T07:47:59.780226","created_date":"2025-10-10T00:00:00"}
