{"id":"https://openalex.org/W4405488648","doi":"https://doi.org/10.1109/embc53108.2024.10782461","title":"Real-time detection of motifs from semi-synthetic calcium imaging data with various noise types","display_name":"Real-time detection of motifs from semi-synthetic calcium imaging data with various noise types","publication_year":2024,"publication_date":"2024-07-15","ids":{"openalex":"https://openalex.org/W4405488648","doi":"https://doi.org/10.1109/embc53108.2024.10782461","pmid":"https://pubmed.ncbi.nlm.nih.gov/40039703"},"language":"en","primary_location":{"id":"doi:10.1109/embc53108.2024.10782461","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc53108.2024.10782461","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040240076","display_name":"Zongkai He","orcid":"https://orcid.org/0000-0003-2395-845X"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Zhucheng He","raw_affiliation_strings":["University of Tsukuba,Graduate School of Comprehensive Human Sciences,Tsukuba,Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tsukuba,Graduate School of Comprehensive Human Sciences,Tsukuba,Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040016429","display_name":"Pablo Vergara","orcid":"https://orcid.org/0000-0001-8601-9551"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Pablo Vergara","raw_affiliation_strings":["University of Tsukuba,Institute of Systems and Information Engineering / Center for Artificial Intelligence Research (C-AIR),Tsukuba,Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tsukuba,Institute of Systems and Information Engineering / Center for Artificial Intelligence Research (C-AIR),Tsukuba,Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030002585","display_name":"Masanori Sakaguchi","orcid":"https://orcid.org/0000-0002-7211-9452"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masanori Sakaguchi","raw_affiliation_strings":["University of Tsukuba,Institute of Systems and Information Engineering / Center for Artificial Intelligence Research (C-AIR),Tsukuba,Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tsukuba,Institute of Systems and Information Engineering / Center for Artificial Intelligence Research (C-AIR),Tsukuba,Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067413211","display_name":"Taro Tezuka","orcid":"https://orcid.org/0000-0002-5628-9961"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I99561568","display_name":"Tsukuba International University","ror":"https://ror.org/015q2z284","country_code":"JP","type":"education","lineage":["https://openalex.org/I99561568"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Taro Tezuka","raw_affiliation_strings":["University of Tsukuba,International Institute for Integrative Sleep Medicine (WPI-IIIS),Tsukuba,Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tsukuba,International Institute for Integrative Sleep Medicine (WPI-IIIS),Tsukuba,Japan","institution_ids":["https://openalex.org/I99561568","https://openalex.org/I146399215"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2024","issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10077","display_name":"Neuroscience and Neuropharmacology Research","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10077","display_name":"Neuroscience and Neuropharmacology Research","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.9769999980926514,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5659253001213074},{"id":"https://openalex.org/keywords/synthetic-data","display_name":"Synthetic data","score":0.5490413904190063},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.5181337594985962},{"id":"https://openalex.org/keywords/calcium-imaging","display_name":"Calcium imaging","score":0.5178411602973938},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4792235493659973},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4466707706451416},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3547403812408447},{"id":"https://openalex.org/keywords/calcium","display_name":"Calcium","score":0.26767897605895996},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.13091975450515747},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.11906155943870544}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5659253001213074},{"id":"https://openalex.org/C160920958","wikidata":"https://www.wikidata.org/wiki/Q7662746","display_name":"Synthetic data","level":2,"score":0.5490413904190063},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.5181337594985962},{"id":"https://openalex.org/C2776032975","wikidata":"https://www.wikidata.org/wiki/Q5018833","display_name":"Calcium imaging","level":3,"score":0.5178411602973938},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4792235493659973},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4466707706451416},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3547403812408447},{"id":"https://openalex.org/C519063684","wikidata":"https://www.wikidata.org/wiki/Q706","display_name":"Calcium","level":2,"score":0.26767897605895996},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.13091975450515747},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.11906155943870544},{"id":"https://openalex.org/C191897082","wikidata":"https://www.wikidata.org/wiki/Q11467","display_name":"Metallurgy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000200","descriptor_name":"Action Potentials","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D000200","descriptor_name":"Action Potentials","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D000200","descriptor_name":"Action Potentials","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002118","descriptor_name":"Calcium","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002118","descriptor_name":"Calcium","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002118","descriptor_name":"Calcium","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002118","descriptor_name":"Calcium","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006624","descriptor_name":"Hippocampus","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D006624","descriptor_name":"Hippocampus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D006624","descriptor_name":"Hippocampus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc53108.2024.10782461","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc53108.2024.10782461","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:40039703","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40039703","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/13","display_name":"Climate action"}],"awards":[{"id":"https://openalex.org/G7039250822","display_name":"Deciphering the mysteries of sleep:creating a global network of sleep neurobiologists","funder_award_id":"22K21351","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1975958074","https://openalex.org/W1979085769","https://openalex.org/W2025796694","https://openalex.org/W2071290167","https://openalex.org/W2115107366","https://openalex.org/W2116341396","https://openalex.org/W2119624849","https://openalex.org/W2135029798","https://openalex.org/W2518668427","https://openalex.org/W2752843899","https://openalex.org/W2902570660","https://openalex.org/W2949065250","https://openalex.org/W2949285482","https://openalex.org/W2952986861","https://openalex.org/W2991597663","https://openalex.org/W3199432935","https://openalex.org/W3207218175","https://openalex.org/W4200324156","https://openalex.org/W4200524089","https://openalex.org/W4385629111","https://openalex.org/W6680012447","https://openalex.org/W6743925529"],"related_works":["https://openalex.org/W4295079398","https://openalex.org/W2755342338","https://openalex.org/W2779427294","https://openalex.org/W2775347418","https://openalex.org/W2625805835","https://openalex.org/W2079911747","https://openalex.org/W3116076068","https://openalex.org/W3003936178","https://openalex.org/W2145652935","https://openalex.org/W4383469178"],"abstract_inverted_index":{"The":[0,188],"hippocampus":[1,18],"is":[2,129,225],"an":[3,38],"important":[4,61],"region":[5],"responsible":[6],"for":[7,62,82,185,236],"memory":[8,67],"formation.":[9,68],"Some":[10],"research":[11],"evidence":[12],"suggests":[13],"that":[14,222],"neurons":[15],"in":[16,20,79,156,211],"the":[17,35,64,74,109,116,136,191,223,231],"discharge":[19],"a":[21,127,140,170,202],"sequential":[22],"order":[23,157],"to":[24,44,72,106,158,193,227],"form":[25],"specific":[26],"activity":[27],"patterns.":[28],"Multiple":[29],"replayed":[30,46,57,198],"spike":[31,58,199],"sequences":[32,48,200],"may":[33],"represent":[34],"recurrence":[36],"of":[37,55,66,77,101,111,118,126,139,197,205,233],"individual's":[39],"memory,":[40],"and":[41,52],"scientists":[42],"refer":[43],"these":[45,56],"spatiotemporal":[47],"as":[49],"motifs.":[50,217],"Identification":[51],"online":[53],"detection":[54,75,122,183,196],"trains":[59],"are":[60,93],"studying":[63],"mechanisms":[65],"This":[69],"work":[70],"aims":[71],"evaluate":[73],"accuracy":[76],"motifs":[78,88,149,214,238],"Calcium":[80],"imaging":[81],"semisynthetic":[83],"data":[84,97],"where":[85],"manually":[86],"identified":[87],"(originating":[89],"from":[90],"real":[91],"data)":[92],"embedded":[94],"into":[95],"synthetic":[96],"containing":[98],"various":[99],"types":[100],"noise.":[102],"It":[103,207],"allows":[104],"us":[105],"accurately":[107],"pinpoint":[108],"timing":[110],"motif":[112,142],"occurrences,":[113],"thereby":[114],"facilitating":[115],"evaluation":[117],"our":[119,180],"method's":[120,181],"real-time":[121,182,195],"performance.The":[123],"action":[124],"potential":[125],"neuron":[128],"typically":[130],"completed":[131],"within":[132,201],"three":[133],"milliseconds,":[134],"while":[135],"replay":[137,186],"time":[138],"complete":[141],"usually":[143],"spans":[144],"several":[145],"hundred":[146],"milliseconds.":[147,206],"Ideally,":[148],"should":[150],"be":[151],"detected":[152],"before":[153],"they":[154],"end":[155],"investigate":[159],"their":[160],"functions":[161],"causally":[162],"through":[163],"intervention.":[164],"For":[165],"detecting":[166,212],"motifs,":[167],"we":[168,219],"used":[169],"non-negative":[171],"matrix":[172],"factorization":[173],"algorithm":[174],"seqNMF.":[175],"We":[176],"conducted":[177],"tests":[178],"on":[179],"performance":[184],"events.":[187],"method":[189,224],"exhibited":[190],"ability":[192],"perform":[194],"few":[203],"tens":[204],"was":[208],"more":[209],"effective":[210],"large":[213],"than":[215],"small":[216],"However,":[218],"also":[220],"found":[221],"susceptible":[226],"increased":[228],"jitter,":[229],"suggesting":[230],"importance":[232],"time-precise":[234],"recording":[235],"retrieving":[237],"robustly.":[239]},"counts_by_year":[],"updated_date":"2026-07-18T07:39:51.176621","created_date":"2025-10-10T00:00:00"}
