{"id":"https://openalex.org/W4405489046","doi":"https://doi.org/10.1109/embc53108.2024.10782350","title":"Leveraging Graph Neural Networks for MIC Prediction in Antimicrobial Resistance Studies","display_name":"Leveraging Graph Neural Networks for MIC Prediction in Antimicrobial Resistance Studies","publication_year":2024,"publication_date":"2024-07-15","ids":{"openalex":"https://openalex.org/W4405489046","doi":"https://doi.org/10.1109/embc53108.2024.10782350","pmid":"https://pubmed.ncbi.nlm.nih.gov/40039779"},"language":"en","primary_location":{"id":"doi:10.1109/embc53108.2024.10782350","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc53108.2024.10782350","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069692248","display_name":"Zonghan Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zonghan Zhang","raw_affiliation_strings":["Mississippi State University,Computer Science and Engineering"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University,Computer Science and Engineering","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115513391","display_name":"Ramyasri Veerapaneni","orcid":null},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ramyasri Veerapaneni","raw_affiliation_strings":["Mississippi State University,Computer Science and Engineering"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University,Computer Science and Engineering","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049235725","display_name":"Moses B. Ayoola","orcid":"https://orcid.org/0000-0002-2669-6347"},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Moses Ayoola","raw_affiliation_strings":["Mississippi State University,Comparative Biomedical Science, College of Veterinary Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University,Comparative Biomedical Science, College of Veterinary Medicine","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101289996","display_name":"Athish Ram Das","orcid":null},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Athish Ram Das","raw_affiliation_strings":["Mississippi State University,Comparative Biomedical Science, College of Veterinary Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University,Comparative Biomedical Science, College of Veterinary Medicine","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082832007","display_name":"Zhiqian Chen","orcid":"https://orcid.org/0000-0003-4112-9647"},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiqian Chen","raw_affiliation_strings":["Mississippi State University,Computer Science and Engineering"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University,Computer Science and Engineering","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060469989","display_name":"Bindu Nanduri","orcid":"https://orcid.org/0000-0002-9996-2976"},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bindu Nanduri","raw_affiliation_strings":["Mississippi State University,Comparative Biomedical Science, College of Veterinary Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University,Comparative Biomedical Science, College of Veterinary Medicine","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5104004004","display_name":"Mahalingam Ramkumar","orcid":null},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mahalingam Ramkumar","raw_affiliation_strings":["Mississippi State University,Computer Science and Engineering"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University,Computer Science and Engineering","institution_ids":["https://openalex.org/I99041443"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I99041443"],"apc_list":null,"apc_paid":null,"fwci":7.0662,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.96920647,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"2024","issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9753999710083008,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6514893174171448},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5704663991928101},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44627222418785095},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4285162091255188},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34498265385627747},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.20605170726776123}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6514893174171448},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5704663991928101},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44627222418785095},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4285162091255188},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34498265385627747},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.20605170726776123}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008826","descriptor_name":"Microbial Sensitivity Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008826","descriptor_name":"Microbial Sensitivity Tests","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008826","descriptor_name":"Microbial Sensitivity Tests","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc53108.2024.10782350","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc53108.2024.10782350","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:40039779","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40039779","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.47999998927116394,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1984535775","https://openalex.org/W2001496424","https://openalex.org/W2074231493","https://openalex.org/W2101234009","https://openalex.org/W2102513193","https://openalex.org/W2139642783","https://openalex.org/W2952668074","https://openalex.org/W4288419263","https://openalex.org/W4379055832","https://openalex.org/W4387661870","https://openalex.org/W4387738060","https://openalex.org/W4388541060","https://openalex.org/W4390115006","https://openalex.org/W4390278174","https://openalex.org/W4390889626","https://openalex.org/W4391009576","https://openalex.org/W4391051506","https://openalex.org/W4391052015","https://openalex.org/W4391126196","https://openalex.org/W4391227938","https://openalex.org/W4391241697","https://openalex.org/W4391247512","https://openalex.org/W4391250913","https://openalex.org/W4391324686","https://openalex.org/W4391605059","https://openalex.org/W4403449208","https://openalex.org/W6760045743"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474"],"abstract_inverted_index":{"Antimicrobial":[0],"resistance":[1,25],"(AMR)":[2],"poses":[3],"a":[4,79,117,138],"significant":[5],"challenge":[6],"in":[7,99],"healthcare":[8],"and":[9,35,66,127,152],"public":[10],"health,":[11],"with":[12],"organisms":[13],"such":[14],"as":[15],"nontyphoidal":[16],"Salmonella":[17],"leading":[18],"the":[19,33,40,54,88,96,121,135,154,171,181,185],"way":[20],"due":[21],"to":[22,26,47,82],"their":[23],"escalating":[24],"antimicrobial":[27,49,91,190],"agents.":[28],"This":[29,93,166],"situation":[30],"severely":[31],"complicates":[32],"management":[34],"containment":[36],"of":[37,73,90,173],"diseases,":[38],"highlighting":[39],"urgent":[41],"need":[42],"for":[43,58,101,143],"more":[44],"effective":[45],"techniques":[46],"assess":[48],"susceptibility.":[50],"Conventional":[51],"methods,":[52],"including":[53],"broth":[55],"microdilution":[56],"technique":[57],"determining":[59],"Minimum":[60],"Inhibitory":[61],"Concentrations":[62],"(MICs),":[63],"are":[64],"time-consuming":[65],"require":[67],"extensive":[68],"manual":[69],"effort.":[70],"The":[71,146],"advent":[72],"machine":[74],"learning":[75],"(ML)":[76],"technologies":[77],"offers":[78],"revolutionary":[80],"approach":[81,108,167],"predicting":[83],"MICs,":[84],"thereby":[85],"potentially":[86],"increasing":[87],"efficacy":[89],"therapies.":[92],"paper":[94],"explores":[95],"latest":[97],"advancements":[98],"ML":[100],"MIC":[102,128,144,174],"prediction,":[103],"focusing":[104],"on":[105,180],"an":[106],"innovative":[107],"using":[109],"Graph":[110],"Neural":[111],"Networks":[112],"(GNNs),":[113],"which":[114],"could":[115],"provide":[116],"novel":[118,139],"insight":[119],"into":[120,161],"correlation":[122],"between":[123],"gene":[124],"fragment":[125],"similarities":[126,155],"values.":[129],"Within":[130],"this":[131],"paper,":[132],"we":[133],"introduce":[134],"K-mer":[136,147],"GNN,":[137],"GNN":[140,148,162],"model":[141,149],"designed":[142],"prediction.":[145],"distinctively":[150],"identifies":[151],"incorporates":[153],"among":[156],"k-mers,":[157],"integrating":[158],"these":[159],"insights":[160],"alongside":[163],"k-mer":[164,186],"features.":[165],"not":[168],"only":[169],"elevates":[170],"precision":[172],"predictions":[175],"but":[176],"also":[177],"sheds":[178],"light":[179],"genomic":[182],"factors":[183],"at":[184],"level":[187],"that":[188],"drive":[189],"resistance.":[191]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":1}],"updated_date":"2026-08-29T07:29:34.045763","created_date":"2025-10-10T00:00:00"}
