{"id":"https://openalex.org/W4405489431","doi":"https://doi.org/10.1109/embc53108.2024.10782048","title":"SimICL: A Simple Visual In-context Learning Framework for Ultrasound Segmentation","display_name":"SimICL: A Simple Visual In-context Learning Framework for Ultrasound Segmentation","publication_year":2024,"publication_date":"2024-07-15","ids":{"openalex":"https://openalex.org/W4405489431","doi":"https://doi.org/10.1109/embc53108.2024.10782048","pmid":"https://pubmed.ncbi.nlm.nih.gov/40040071"},"language":"en","primary_location":{"id":"doi:10.1109/embc53108.2024.10782048","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc53108.2024.10782048","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020142976","display_name":"Yuyue Zhou","orcid":"https://orcid.org/0000-0003-3606-3401"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yuyue Zhou","raw_affiliation_strings":["University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068068452","display_name":"Banafshe Felfeliyan","orcid":"https://orcid.org/0000-0002-3404-7048"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Banafshe Felfeliyan","raw_affiliation_strings":["University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029876399","display_name":"Shrimanti Ghosh","orcid":"https://orcid.org/0000-0003-0659-0147"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Shrimanti Ghosh","raw_affiliation_strings":["University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039110200","display_name":"Jessica Knight","orcid":"https://orcid.org/0000-0003-2508-6130"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jessica Knight","raw_affiliation_strings":["University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041026954","display_name":"Fatima Alves-Pereira","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fatima Alves-Pereira","raw_affiliation_strings":["University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110922772","display_name":"Christopher Keen","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Christopher Keen","raw_affiliation_strings":["University of Alberta,Department of Biomedical Engineering,Edmonton,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alberta,Department of Biomedical Engineering,Edmonton,Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071627591","display_name":"Jessica K\u00fcpper","orcid":"https://orcid.org/0000-0001-5381-9501"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jessica K\u00fcpper","raw_affiliation_strings":["University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086414445","display_name":"Abhilash Rakkunedeth Hareendranathan","orcid":"https://orcid.org/0000-0001-6201-9258"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Abhilash Rakkunedeth Hareendranathan","raw_affiliation_strings":["University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035920057","display_name":"Jacob L. Jaremko","orcid":"https://orcid.org/0000-0001-5314-2297"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jacob L. Jaremko","raw_affiliation_strings":["University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alberta,Department of Radiology and Diagnostic Imaging,Edmonton,Canada","institution_ids":["https://openalex.org/I154425047"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.21530011,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2024","issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7660661935806274},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.6799864768981934},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6557005643844604},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6307744383811951},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5890033841133118},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5205339193344116},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.4656468331813812},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.08840498328208923}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7660661935806274},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.6799864768981934},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6557005643844604},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6307744383811951},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5890033841133118},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5205339193344116},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4656468331813812},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.08840498328208923},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D014463","descriptor_name":"Ultrasonography","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014463","descriptor_name":"Ultrasonography","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014463","descriptor_name":"Ultrasonography","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D014953","descriptor_name":"Wrist","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc53108.2024.10782048","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc53108.2024.10782048","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:40040071","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40040071","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W2954234616","https://openalex.org/W3014974815","https://openalex.org/W3017642177","https://openalex.org/W3094502228","https://openalex.org/W3112701542","https://openalex.org/W4281838252","https://openalex.org/W4285186651","https://openalex.org/W4294434188","https://openalex.org/W4312091889","https://openalex.org/W4312804044","https://openalex.org/W4313156423","https://openalex.org/W4320351027","https://openalex.org/W4364387750","https://openalex.org/W4366552071","https://openalex.org/W4386076112","https://openalex.org/W4386422077","https://openalex.org/W4386565663","https://openalex.org/W4387214769","https://openalex.org/W4387725369","https://openalex.org/W4390873795","https://openalex.org/W4394598027","https://openalex.org/W4404782964","https://openalex.org/W6784333009","https://openalex.org/W6838865580","https://openalex.org/W6843258702","https://openalex.org/W6847219583","https://openalex.org/W6849698517","https://openalex.org/W6851701011","https://openalex.org/W6851784875","https://openalex.org/W6857810058"],"related_works":["https://openalex.org/W1585007175","https://openalex.org/W2382521049","https://openalex.org/W2144385241","https://openalex.org/W4300101996","https://openalex.org/W2165950148","https://openalex.org/W4253593777","https://openalex.org/W2951497643","https://openalex.org/W4403053866","https://openalex.org/W2142393343","https://openalex.org/W1522196789"],"abstract_inverted_index":{"Conventional":[0],"deep":[1,43],"learning":[2,28],"models":[3,156,193],"deal":[4],"with":[5,78,101,115,164,181],"images":[6,77,126],"one-by-one,":[7],"requiring":[8],"costly":[9],"and":[10,20,33,144,153,161,167,174,215],"time-consuming":[11],"expert":[12,205],"labeling":[13,210],"in":[14,38,95,223],"the":[15,47,105,203,217],"field":[16],"of":[17,36,142,148,220],"medical":[18],"imaging,":[19],"domain-specific":[21],"restriction":[22],"limits":[23],"model":[24],"generalizability.":[25],"Visual":[26],"in-context":[27],"(ICL)":[29],"is":[30],"a":[31,65,96,121],"new":[32,53,66],"exciting":[34],"area":[35],"research":[37],"computer":[39],"vision.":[40],"Unlike":[41],"conventional":[42,213],"learning,":[44],"ICL":[45,69,75,155],"emphasizes":[46],"model's":[48],"ability":[49],"to":[50,52,109,113,212],"adapt":[51],"tasks":[54],"based":[55],"on":[56,91,195],"given":[57],"examples":[58],"quickly.":[59],"Inspired":[60],"by":[61,170],"MAE-VQGAN,":[62],"we":[63],"proposed":[64],"simple":[67],"visual":[68,74,154],"method":[70,90],"called":[71],"SimICL,":[72],"combining":[73],"pairing":[76],"masked":[79],"image":[80,209,225],"modeling":[81],"(MIM)":[82],"designed":[83],"for":[84,130,190,208],"self-supervised":[85],"learning.":[86],"We":[87,119],"validated":[88],"our":[89],"bony":[92,111,131],"structures":[93,112],"segmentation":[94,152],"wrist":[97],"ultrasound":[98],"(US)":[99],"dataset":[100],"limited":[102,182],"annotations,":[103],"where":[104],"clinical":[106],"objective":[107],"was":[108],"segment":[110],"help":[114],"further":[116],"fracture":[117],"detection.":[118],"used":[120,189],"test":[122],"set":[123],"containing":[124],"3822":[125],"from":[127],"18":[128],"patients":[129],"region":[132],"segmentation.":[133],"SimICL":[134,165,186],"achieved":[135],"an":[136],"remarkably":[137,178],"high":[138,179],"Dice":[139],"coeffient":[140],"(DC)":[141],"0.96":[143],"Jaccard":[145],"Index":[146],"(IoU)":[147],"0.92,":[149],"surpassing":[150],"state-of-the-art":[151],"(a":[157],"maximum":[158],"DC":[159,166],"0.86":[160],"IoU":[162,168],"0.76),":[163],"increasing":[169],"at":[171],"least":[172],"0.10":[173],"0.16":[175],"respectively.":[176],"This":[177,199],"agreement":[180],"manual":[183],"annotations":[184],"indicates":[185],"could":[187,200],"be":[188],"training":[191],"AI":[192,221],"even":[194],"small":[196],"US":[197,224],"datasets.":[198],"dramatically":[201],"decrease":[202],"human":[204],"time":[206],"required":[207],"compared":[211],"approaches,":[214],"enhance":[216],"real-world":[218],"use":[219],"assistance":[222],"analysis.":[226]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
