{"id":"https://openalex.org/W4405491233","doi":"https://doi.org/10.1109/embc53108.2024.10781648","title":"Extraction of patients subpopulations with psychiatric symptoms using a transformer architecture","display_name":"Extraction of patients subpopulations with psychiatric symptoms using a transformer architecture","publication_year":2024,"publication_date":"2024-07-15","ids":{"openalex":"https://openalex.org/W4405491233","doi":"https://doi.org/10.1109/embc53108.2024.10781648","pmid":"https://pubmed.ncbi.nlm.nih.gov/40040233"},"language":"en","primary_location":{"id":"doi:10.1109/embc53108.2024.10781648","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc53108.2024.10781648","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108850946","display_name":"Benjamin Holmes","orcid":null},"institutions":[{"id":"https://openalex.org/I19648265","display_name":"Wright State University","ror":"https://ror.org/04qk6pt94","country_code":"US","type":"education","lineage":["https://openalex.org/I19648265"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Benjamin Holmes","raw_affiliation_strings":["Wright State University,Department of Computer Science and Engineering"],"affiliations":[{"raw_affiliation_string":"Wright State University,Department of Computer Science and Engineering","institution_ids":["https://openalex.org/I19648265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021570308","display_name":"Michael L. Raymer","orcid":null},"institutions":[{"id":"https://openalex.org/I19648265","display_name":"Wright State University","ror":"https://ror.org/04qk6pt94","country_code":"US","type":"education","lineage":["https://openalex.org/I19648265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Raymer","raw_affiliation_strings":["Wright State University,Department of Computer Science and Engineering"],"affiliations":[{"raw_affiliation_string":"Wright State University,Department of Computer Science and Engineering","institution_ids":["https://openalex.org/I19648265"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084532918","display_name":"Tanvi Banerjee","orcid":"https://orcid.org/0000-0002-9794-3755"},"institutions":[{"id":"https://openalex.org/I19648265","display_name":"Wright State University","ror":"https://ror.org/04qk6pt94","country_code":"US","type":"education","lineage":["https://openalex.org/I19648265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tanvi Banerjee","raw_affiliation_strings":["Wright State University,Department of Computer Science and Engineering"],"affiliations":[{"raw_affiliation_string":"Wright State University,Department of Computer Science and Engineering","institution_ids":["https://openalex.org/I19648265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5108850946"],"corresponding_institution_ids":["https://openalex.org/I19648265"],"apc_list":null,"apc_paid":null,"fwci":1.0878,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.82539815,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"2024","issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11396","display_name":"Artificial Intelligence in Healthcare","score":0.9168000221252441,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11021","display_name":"ECG Monitoring and Analysis","score":0.9125999808311462,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.582980751991272},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.5368462204933167},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4389399588108063},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.35743236541748047},{"id":"https://openalex.org/keywords/psychiatry","display_name":"Psychiatry","score":0.32158714532852173},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.1565893292427063},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.15629002451896667},{"id":"https://openalex.org/keywords/history","display_name":"History","score":0.08349144458770752}],"concepts":[{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.582980751991272},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.5368462204933167},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4389399588108063},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.35743236541748047},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.32158714532852173},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.1565893292427063},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.15629002451896667},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.08349144458770752},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001523","descriptor_name":"Mental Disorders","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001523","descriptor_name":"Mental Disorders","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001523","descriptor_name":"Mental Disorders","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001523","descriptor_name":"Mental Disorders","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D001523","descriptor_name":"Mental Disorders","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc53108.2024.10781648","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc53108.2024.10781648","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:40040233","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40040233","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Sustainable cities and communities","id":"https://metadata.un.org/sdg/11"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W2106972184","https://openalex.org/W2149269375","https://openalex.org/W2346915478","https://openalex.org/W2617083299","https://openalex.org/W2768488789","https://openalex.org/W2784499877","https://openalex.org/W2886622968","https://openalex.org/W3008385743","https://openalex.org/W3041242936","https://openalex.org/W3042895962","https://openalex.org/W3047817901","https://openalex.org/W3098949126","https://openalex.org/W3124523525","https://openalex.org/W3158665049","https://openalex.org/W3169863281","https://openalex.org/W3185051273","https://openalex.org/W3208292737","https://openalex.org/W4313439128","https://openalex.org/W4366771357","https://openalex.org/W4372356369","https://openalex.org/W4387569749"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W3108674512","https://openalex.org/W1506200166"],"abstract_inverted_index":{"In":[0,123],"this":[1,78,162],"paper,":[2],"we":[3,160],"demonstrate":[4,77],"a":[5,29,37,52,81,183],"novel":[6],"pipeline":[7],"for":[8,167,193],"identifying":[9],"and":[10,64,67,91,147],"extracting":[11,23,90],"patient":[12,31,86,158],"subpopulations":[13],"from":[14,28,45,110],"unstructured":[15,111],"physician's":[16],"notes.":[17],"We":[18,76],"validate":[19],"the":[20,49,68,127,131,154,191],"method":[21,34,163],"by":[22,71],"patients":[24,109,119,132,136,148],"with":[25,113,120,137,149],"psychiatric":[26],"issues":[27],"general":[30],"population.":[32],"This":[33],"first":[35],"uses":[36],"clinical":[38,188],"metathesaurus":[39],"to":[40,104,117],"select":[41,105],"terms":[42,50],"of":[43,84,108],"interest":[44],"reports,":[46],"then":[47],"vectorizes":[48],"using":[51,60],"transformer":[53],"model.":[54],"These":[55],"vectors'":[56],"dimensions":[57],"are":[58],"reduced":[59],"Uniform":[61],"Manifold":[62],"Approximation":[63],"Projection":[65],"(UMAP),":[66],"results":[69,98],"grouped":[70],"optimal":[72],"cluster":[73,180],"selection":[74],"methods.":[75],"technique":[79],"on":[80,178],"freely-available":[82],"collection":[83],"deidentified":[85],"notes":[87],"(MIMIC":[88],"IV),":[89],"clustering":[92],"\"mental":[93],"or":[94],"behavioral":[95],"dysfunctions\".":[96],"Our":[97],"show":[99],"that":[100],"it":[101],"is":[102],"possible":[103],"user-defined":[106],"groups":[107],"text":[112],"minimal":[114],"model":[115],"oversight":[116],"group":[118],"similar":[121],"profiles.":[122,181],"our":[124],"study":[125],"cohort,":[126],"models":[128],"automatically":[129],"segmented":[130],"into":[133],"two":[134],"groups:":[135],"more":[138],"physical":[139],"symptoms":[140],"(alcohol/drug":[141],"abuse,":[142],"dysarthria,":[143],"tongue-biting,":[144],"eating":[145],"disorders)":[146],"mental/emotional":[150],"symptoms.":[151],"By":[152],"detecting":[153],"underlying":[155],"similarities":[156],"in":[157,187],"profiles,":[159],"believe":[161],"can":[164,185],"be":[165],"utilized":[166],"symptom":[168],"prediction":[169],"tasks,":[170],"as":[171,173],"well":[172],"curating":[174],"treatment":[175],"plans":[176],"based":[177],"their":[179],"Such":[182],"system":[184],"assist":[186],"decision-making":[189],"without":[190],"need":[192],"individually-created":[194],"NLP":[195],"models.":[196]},"counts_by_year":[{"year":2025,"cited_by_count":3}],"updated_date":"2025-12-21T01:58:51.020947","created_date":"2025-10-10T00:00:00"}
