{"id":"https://openalex.org/W4294974897","doi":"https://doi.org/10.1109/embc48229.2022.9871631","title":"Synthetic Generation of 3D Microscopy Images using Generative Adversarial Networks","display_name":"Synthetic Generation of 3D Microscopy Images using Generative Adversarial Networks","publication_year":2022,"publication_date":"2022-07-11","ids":{"openalex":"https://openalex.org/W4294974897","doi":"https://doi.org/10.1109/embc48229.2022.9871631","pmid":"https://pubmed.ncbi.nlm.nih.gov/36086569"},"language":"en","primary_location":{"id":"doi:10.1109/embc48229.2022.9871631","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc48229.2022.9871631","pdf_url":null,"source":{"id":"https://openalex.org/S4363607706","display_name":"2022 44th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 44th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079577626","display_name":"Hemaxi Narotamo","orcid":"https://orcid.org/0000-0003-1933-4273"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4210143597","display_name":"Instituto Superior de Educa\u00e7\u00e3o e Ci\u00eancias","ror":"https://ror.org/042vq9b25","country_code":"PT","type":"education","lineage":["https://openalex.org/I4210143597"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Hemaxi Narotamo","raw_affiliation_strings":["Institute for Systems and Robotics (ISR/IST), LARSyS, Instituto Superior Tecnico, Universidade de Lisboa,Lisbon,Portugal","Institute for Systems and Robotics (ISR/IST), LARSyS, Instituto Superior Tecnico, Universidade de Lisboa, Lisbon, Portugal","Joao lobo Antunes, Faculdade de Medicina, Instituto de Medicina Molecular, Universidade de Lisboa, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Systems and Robotics (ISR/IST), LARSyS, Instituto Superior Tecnico, Universidade de Lisboa,Lisbon,Portugal","institution_ids":["https://openalex.org/I4210143597"]},{"raw_affiliation_string":"Institute for Systems and Robotics (ISR/IST), LARSyS, Instituto Superior Tecnico, Universidade de Lisboa, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"Joao lobo Antunes, Faculdade de Medicina, Instituto de Medicina Molecular, Universidade de Lisboa, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090515603","display_name":"Marie Ouarn\u00e9","orcid":"https://orcid.org/0000-0003-4724-4363"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Marie Ouarne","raw_affiliation_strings":["Instituto de Medicina Molecular, Universidade de Lisboa,Joao lobo Antunes, Faculdade de Medicina,Lisbon,Portugal","Joao lobo Antunes, Faculdade de Medicina, Instituto de Medicina Molecular, Universidade de Lisboa, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Medicina Molecular, Universidade de Lisboa,Joao lobo Antunes, Faculdade de Medicina,Lisbon,Portugal","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"Joao lobo Antunes, Faculdade de Medicina, Instituto de Medicina Molecular, Universidade de Lisboa, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020345179","display_name":"Cl\u00e1udio A. Franco","orcid":"https://orcid.org/0000-0002-2861-3883"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Claudio Areias Franco","raw_affiliation_strings":["Instituto de Medicina Molecular, Universidade de Lisboa,Joao lobo Antunes, Faculdade de Medicina,Lisbon,Portugal","Joao lobo Antunes, Faculdade de Medicina, Instituto de Medicina Molecular, Universidade de Lisboa, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Medicina Molecular, Universidade de Lisboa,Joao lobo Antunes, Faculdade de Medicina,Lisbon,Portugal","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"Joao lobo Antunes, Faculdade de Medicina, Instituto de Medicina Molecular, Universidade de Lisboa, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065818684","display_name":"Margarida Silveira","orcid":"https://orcid.org/0000-0001-7777-3675"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4210143597","display_name":"Instituto Superior de Educa\u00e7\u00e3o e Ci\u00eancias","ror":"https://ror.org/042vq9b25","country_code":"PT","type":"education","lineage":["https://openalex.org/I4210143597"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Margarida Silveira","raw_affiliation_strings":["Institute for Systems and Robotics (ISR/IST), LARSyS, Instituto Superior Tecnico, Universidade de Lisboa,Lisbon,Portugal","Institute for Systems and Robotics (ISR/IST), LARSyS, Instituto Superior Tecnico, Universidade de Lisboa, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Systems and Robotics (ISR/IST), LARSyS, Instituto Superior Tecnico, Universidade de Lisboa,Lisbon,Portugal","institution_ids":["https://openalex.org/I4210143597"]},{"raw_affiliation_string":"Institute for Systems and Robotics (ISR/IST), LARSyS, Instituto Superior Tecnico, Universidade de Lisboa, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.8213,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.9163286,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"2022","issue":null,"first_page":"549","last_page":"552"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10775","display_name":"Generative Adversarial Networks and Image Synthesis","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8300434947013855},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.756144106388092},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5802029371261597},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.5185976028442383},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5012211799621582},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4637489914894104},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.46024957299232483},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.4588277041912079},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.44735419750213623},{"id":"https://openalex.org/keywords/image-translation","display_name":"Image translation","score":0.42597946524620056},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.3838668465614319}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8300434947013855},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.756144106388092},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5802029371261597},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.5185976028442383},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5012211799621582},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4637489914894104},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.46024957299232483},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4588277041912079},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.44735419750213623},{"id":"https://openalex.org/C2779757391","wikidata":"https://www.wikidata.org/wiki/Q6002292","display_name":"Image translation","level":3,"score":0.42597946524620056},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.3838668465614319},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc48229.2022.9871631","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc48229.2022.9871631","pdf_url":null,"source":{"id":"https://openalex.org/S4363607706","display_name":"2022 44th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 44th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:36086569","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36086569","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4663432818","display_name":null,"funder_award_id":"2020.04511","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G4945470399","display_name":"PRINCIPLES OF AXIAL POLARITY-DRIVEN VASCULAR PATTERNING","funder_award_id":"679368","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"},{"id":"https://openalex.org/G533028663","display_name":null,"funder_award_id":"17CVD03","funder_id":"https://openalex.org/F4320320890","funder_display_name":"Fondation Leducq"},{"id":"https://openalex.org/G7933280428","display_name":null,"funder_award_id":"PTDC/MED-PAT/31639/2017,PTDC/BIA-CEL/32180/2017,CEECIND/02589/2018","funder_id":"https://openalex.org/F4320337197","funder_display_name":"Nuclear Fuel Cycle and Supply Chain"}],"funders":[{"id":"https://openalex.org/F4320320890","display_name":"Fondation Leducq","ror":"https://ror.org/01czwga19"},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"},{"id":"https://openalex.org/F4320337197","display_name":"Nuclear Fuel Cycle and Supply Chain","ror":"https://ror.org/05tj7dm33"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W2810924486","https://openalex.org/W2913401199","https://openalex.org/W2963073614","https://openalex.org/W2990489240","https://openalex.org/W2991453947","https://openalex.org/W3047625747","https://openalex.org/W3126915734","https://openalex.org/W3197217317","https://openalex.org/W4200463051","https://openalex.org/W4200547831","https://openalex.org/W4287182906","https://openalex.org/W4301206121","https://openalex.org/W4320013936","https://openalex.org/W6765779288","https://openalex.org/W6770605826","https://openalex.org/W6795056587","https://openalex.org/W6801006287"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2251519152"],"abstract_inverted_index":{"Fluorescence":[0],"microscopy":[1,64,124],"images":[2,65,83,101,144,167],"of":[3,9,27,62,100,135,141,186],"cell":[4],"organelles":[5],"enable":[6],"the":[7,23,77,98,133,136,142,160,170,184,191],"study":[8],"various":[10],"complex":[11],"biological":[12],"processes.":[13],"Recently,":[14],"deep":[15],"learning":[16],"(DL)":[17],"models":[18,31],"are":[19,86],"being":[20],"used":[21],"for":[22],"accurate":[24],"automatic":[25],"analysis":[26,38],"these":[28],"images.":[29,109,125],"DL":[30,51],"present":[32],"state-of-the-art":[33],"performance":[34],"in":[35,76,91,111,132,190],"many":[36],"image":[37],"tasks":[39],"such":[40],"as":[41],"object":[42],"classification,":[43],"segmentation":[44],"and":[45,70,148],"detection.":[46],"However,":[47],"to":[48,120,164,169,182],"train":[49],"a":[50,53,67,81,150,177],"model":[52],"large":[54],"manually":[55],"annotated":[56,188],"dataset":[57],"is":[58,66,162],"required.":[59],"Manual":[60],"annotation":[61],"3D":[63,123],"time-consuming":[68],"task":[69],"must":[71],"be":[72],"performed":[73],"by":[74],"specialists":[75],"area.":[78],"Thus,":[79],"only":[80],"few":[82],"with":[84,102],"annotations":[85],"typically":[87],"available.":[88],"Recent":[89],"advances":[90],"generative":[92],"adversarial":[93],"networks":[94],"(GANs)":[95],"have":[96,175],"allowed":[97],"translation":[99],"some":[103],"conditions":[104,134],"into":[105],"realistic":[106],"looking":[107],"synthetic":[108,122,166],"Therefore,":[110],"this":[112],"work":[113],"we":[114,174],"explore":[115],"approaches":[116,129],"based":[117,179],"on":[118,180],"GANs":[119,181],"create":[121],"We":[126],"compare":[127],"four":[128],"that":[130,159],"differ":[131],"input":[137],"image.":[138],"The":[139,156],"quality":[140],"generated":[143],"was":[145],"assessed":[146],"visually":[147],"using":[149],"quantitative":[151],"objective":[152],"GAN":[153,161],"evaluation":[154],"metric.":[155],"results":[157],"showed":[158],"able":[163],"generate":[165],"similar":[168],"real":[171],"ones.":[172],"Hence,":[173],"presented":[176],"method":[178],"overcome":[183],"issue":[185],"small":[187],"datasets":[189],"biomedical":[192],"imaging":[193],"field.":[194]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
