{"id":"https://openalex.org/W4295443626","doi":"https://doi.org/10.1109/embc48229.2022.9871086","title":"A Deep Multi-Label Segmentation Network For Eosinophilic Esophagitis Whole Slide Biopsy Diagnostics","display_name":"A Deep Multi-Label Segmentation Network For Eosinophilic Esophagitis Whole Slide Biopsy Diagnostics","publication_year":2022,"publication_date":"2022-07-11","ids":{"openalex":"https://openalex.org/W4295443626","doi":"https://doi.org/10.1109/embc48229.2022.9871086","pmid":"https://pubmed.ncbi.nlm.nih.gov/36085661"},"language":"en","primary_location":{"id":"doi:10.1109/embc48229.2022.9871086","is_oa":true,"landing_page_url":"https://doi.org/10.1109/embc48229.2022.9871086","pdf_url":"https://ieeexplore.ieee.org/ielx7/9870821/9870822/09871086.pdf","source":{"id":"https://openalex.org/S4363607706","display_name":"2022 44th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 44th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ieeexplore.ieee.org/ielx7/9870821/9870822/09871086.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077139721","display_name":"Nati Daniel","orcid":"https://orcid.org/0000-0002-0939-3379"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Nati Daniel","raw_affiliation_strings":["Faculty of Medicine,Dept. of Physiology, Biophysics and System Biology,Technion,Israel","Dept. of Physiology, Biophysics and System Biology, Faculty of Medicine, Technion, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine,Dept. of Physiology, Biophysics and System Biology,Technion,Israel","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"Dept. of Physiology, Biophysics and System Biology, Faculty of Medicine, Technion, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039494777","display_name":"Ariel Larey","orcid":"https://orcid.org/0000-0002-5006-9300"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ariel Larey","raw_affiliation_strings":["Faculty of Computer Science,Technion,Israel","Faculty of Computer Science, Technion, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Computer Science,Technion,Israel","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"Faculty of Computer Science, Technion, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023083640","display_name":"Eliel Aknin","orcid":"https://orcid.org/0000-0003-4591-7018"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Eliel Aknin","raw_affiliation_strings":["Faculty of Industrial Engineering,Technion,Israel","Faculty of Industrial Engineering, Technion, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Industrial Engineering,Technion,Israel","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"Faculty of Industrial Engineering, Technion, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073091009","display_name":"G. A. Osswald","orcid":"https://orcid.org/0000-0003-3915-7462"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]},{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Garrett A. Osswald","raw_affiliation_strings":["Cincinnati Children&#x0027;s Hospital Medical Center, University of Cincinnati College of Medicine,Division of Allergy and Immunology,Dept. of Pediatrics,OH,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cincinnati Children&#x0027;s Hospital Medical Center, University of Cincinnati College of Medicine,Division of Allergy and Immunology,Dept. of Pediatrics,OH,USA","institution_ids":["https://openalex.org/I1285204247","https://openalex.org/I63135867"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074942966","display_name":"Julie M. Caldwell","orcid":"https://orcid.org/0000-0002-3855-299X"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]},{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julie M. Caldwell","raw_affiliation_strings":["Cincinnati Children&#x0027;s Hospital Medical Center, University of Cincinnati College of Medicine,Division of Allergy and Immunology,Dept. of Pediatrics,OH,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cincinnati Children&#x0027;s Hospital Medical Center, University of Cincinnati College of Medicine,Division of Allergy and Immunology,Dept. of Pediatrics,OH,USA","institution_ids":["https://openalex.org/I1285204247","https://openalex.org/I63135867"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045599738","display_name":"Mark Rochman","orcid":"https://orcid.org/0000-0002-0818-927X"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]},{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Rochman","raw_affiliation_strings":["Cincinnati Children&#x0027;s Hospital Medical Center, University of Cincinnati College of Medicine,Division of Allergy and Immunology,Dept. of Pediatrics,OH,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cincinnati Children&#x0027;s Hospital Medical Center, University of Cincinnati College of Medicine,Division of Allergy and Immunology,Dept. of Pediatrics,OH,USA","institution_ids":["https://openalex.org/I1285204247","https://openalex.org/I63135867"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058290389","display_name":"Margaret H. Collins","orcid":"https://orcid.org/0000-0002-0756-5974"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]},{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Margaret H. Collins","raw_affiliation_strings":["Cincinnati Children&#x0027;s Hospital Medical Center, University of Cincinnati College of Medicine,Dept. of Pathology,Cincinnati,OH,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cincinnati Children&#x0027;s Hospital Medical Center, University of Cincinnati College of Medicine,Dept. of Pathology,Cincinnati,OH,USA","institution_ids":["https://openalex.org/I1285204247","https://openalex.org/I63135867"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006641884","display_name":"Guang\u2010Yu Yang","orcid":"https://orcid.org/0000-0002-5987-7750"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guang-Yu Yang","raw_affiliation_strings":["Ann &#x0026; Robert H. Lurie Children&#x0027;s Hospital of Chicago, Northwestern University, The Feinberg School of Medicine,Dept. of Pathology,Chicago,IL,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ann &#x0026; Robert H. Lurie Children&#x0027;s Hospital of Chicago, Northwestern University, The Feinberg School of Medicine,Dept. of Pathology,Chicago,IL,USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022287329","display_name":"Nicoleta C. Arva","orcid":"https://orcid.org/0000-0001-5519-1586"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicoleta C. Arva","raw_affiliation_strings":["Ann &#x0026; Robert H. Lurie Children&#x0027;s Hospital of Chicago, Northwestern University, The Feinberg School of Medicine,Dept. of Pathology,Chicago,IL,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ann &#x0026; Robert H. Lurie Children&#x0027;s Hospital of Chicago, Northwestern University, The Feinberg School of Medicine,Dept. of Pathology,Chicago,IL,USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082190293","display_name":"Kelley E. Capocelli","orcid":"https://orcid.org/0000-0002-8256-2896"},"institutions":[{"id":"https://openalex.org/I4210096275","display_name":"Children's Hospital Colorado","ror":"https://ror.org/00mj9k629","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210096275"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kelley E. Capocelli","raw_affiliation_strings":["Children&#x0027;s Hospital Colorado,Dept. of Pathology,Aurora,CO,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Children&#x0027;s Hospital Colorado,Dept. of Pathology,Aurora,CO,USA","institution_ids":["https://openalex.org/I4210096275","https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100715040","display_name":"Marc E. Rothenberg","orcid":"https://orcid.org/0000-0001-9790-6332"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]},{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marc E. Rothenberg","raw_affiliation_strings":["Cincinnati Children&#x0027;s Hospital Medical Center, University of Cincinnati College of Medicine,Division of Allergy and Immunology,Dept. of Pediatrics,OH,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cincinnati Children&#x0027;s Hospital Medical Center, University of Cincinnati College of Medicine,Division of Allergy and Immunology,Dept. of Pediatrics,OH,USA","institution_ids":["https://openalex.org/I1285204247","https://openalex.org/I63135867"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017505256","display_name":"Yonatan Savir","orcid":"https://orcid.org/0000-0002-5345-8491"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yonatan Savir","raw_affiliation_strings":["Faculty of Medicine,Dept. of Physiology, Biophysics and System Biology,Technion,Israel","Dept. of Physiology, Biophysics and System Biology, Faculty of Medicine, Technion, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine,Dept. of Physiology, Biophysics and System Biology,Technion,Israel","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"Dept. of Physiology, Biophysics and System Biology, Faculty of Medicine, Technion, Israel","institution_ids":["https://openalex.org/I174306211"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2022","issue":null,"first_page":"3211","last_page":"3217"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12538","display_name":"Eosinophilic Esophagitis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12538","display_name":"Eosinophilic Esophagitis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12528","display_name":"IL-33, ST2, and ILC Pathways","score":0.9742000102996826,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12600","display_name":"Eosinophilic Disorders and Syndromes","score":0.9128000140190125,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/eosinophilic-esophagitis","display_name":"Eosinophilic esophagitis","score":0.7685737609863281},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6511691808700562},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6448788642883301},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5737829208374023},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4710367023944855},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.44696614146232605},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.446444034576416},{"id":"https://openalex.org/keywords/biopsy","display_name":"Biopsy","score":0.4187493920326233},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.36120346188545227},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.2841029167175293},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.20829716324806213}],"concepts":[{"id":"https://openalex.org/C2781065132","wikidata":"https://www.wikidata.org/wiki/Q2057356","display_name":"Eosinophilic esophagitis","level":3,"score":0.7685737609863281},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6511691808700562},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6448788642883301},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5737829208374023},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4710367023944855},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.44696614146232605},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.446444034576416},{"id":"https://openalex.org/C2775934546","wikidata":"https://www.wikidata.org/wiki/Q179991","display_name":"Biopsy","level":2,"score":0.4187493920326233},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.36120346188545227},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.2841029167175293},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.20829716324806213}],"mesh":[{"descriptor_ui":"D001706","descriptor_name":"Biopsy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001706","descriptor_name":"Biopsy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001706","descriptor_name":"Biopsy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007958","descriptor_name":"Leukocyte Count","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007958","descriptor_name":"Leukocyte Count","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007958","descriptor_name":"Leukocyte Count","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011996","descriptor_name":"Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011996","descriptor_name":"Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011996","descriptor_name":"Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057765","descriptor_name":"Eosinophilic Esophagitis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D057765","descriptor_name":"Eosinophilic Esophagitis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D057765","descriptor_name":"Eosinophilic Esophagitis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1109/embc48229.2022.9871086","is_oa":true,"landing_page_url":"https://doi.org/10.1109/embc48229.2022.9871086","pdf_url":"https://ieeexplore.ieee.org/ielx7/9870821/9870822/09871086.pdf","source":{"id":"https://openalex.org/S4363607706","display_name":"2022 44th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 44th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:36085661","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36085661","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9552249","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9552249","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Annu Int Conf IEEE Eng Med Biol Soc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1109/embc48229.2022.9871086","is_oa":true,"landing_page_url":"https://doi.org/10.1109/embc48229.2022.9871086","pdf_url":"https://ieeexplore.ieee.org/ielx7/9870821/9870822/09871086.pdf","source":{"id":"https://openalex.org/S4363607706","display_name":"2022 44th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 44th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},"sustainable_development_goals":[{"score":0.6000000238418579,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G1077579422","display_name":null,"funder_award_id":"R01 AI045898-21","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1213946416","display_name":null,"funder_award_id":"U2CTR002818","funder_id":"https://openalex.org/F4320311352","funder_display_name":"American Partnership for Eosinophilic Disorders"},{"id":"https://openalex.org/G1237309474","display_name":null,"funder_award_id":"U54 AI117804","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2101806363","display_name":null,"funder_award_id":"R01 AI045898","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2965718594","display_name":null,"funder_award_id":"U54 AI117804","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G2976362549","display_name":null,"funder_award_id":"U54 AI117804","funder_id":"https://openalex.org/F4320311352","funder_display_name":"American Partnership for Eosinophilic Disorders"},{"id":"https://openalex.org/G2993597392","display_name":null,"funder_award_id":"R01 AI045898","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G3226332870","display_name":null,"funder_award_id":"AI045898","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G361019351","display_name":null,"funder_award_id":"U2C TR002818","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G4279768677","display_name":null,"funder_award_id":"U2CTR002818","funder_id":"https://openalex.org/F4320316755","funder_display_name":"Rare Diseases Clinical Research Network"},{"id":"https://openalex.org/G4750534151","display_name":null,"funder_award_id":"U2CTR002818","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G481745248","display_name":null,"funder_award_id":"U54 AI117804","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G4913822037","display_name":null,"funder_award_id":"U54 AI117804","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G5580742295","display_name":null,"funder_award_id":"P30 DK078392","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G5810525240","display_name":null,"funder_award_id":"AI117804","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6182859360","display_name":null,"funder_award_id":"1619/20","funder_id":"https://openalex.org/F4320322252","funder_display_name":"Israel Science Foundation"},{"id":"https://openalex.org/G6607237905","display_name":null,"funder_award_id":"NIH R01","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G773846248","display_name":null,"funder_award_id":"U2CTR002818","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G8288036582","display_name":null,"funder_award_id":"NIH R01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320311352","display_name":"American Partnership for Eosinophilic Disorders","ror":"https://ror.org/023943s16"},{"id":"https://openalex.org/F4320313380","display_name":"Rappaport Foundation","ror":null},{"id":"https://openalex.org/F4320316755","display_name":"Rare Diseases Clinical Research Network","ror":null},{"id":"https://openalex.org/F4320319637","display_name":"Eosinophilic Family Coalition","ror":null},{"id":"https://openalex.org/F4320322252","display_name":"Israel Science Foundation","ror":"https://ror.org/04sazxf24"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4295443626.pdf","grobid_xml":"https://content.openalex.org/works/W4295443626.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W1999686695","https://openalex.org/W2026041959","https://openalex.org/W2106818598","https://openalex.org/W2319895086","https://openalex.org/W2412782625","https://openalex.org/W2504150216","https://openalex.org/W2523825372","https://openalex.org/W2533800772","https://openalex.org/W2554423077","https://openalex.org/W2604665028","https://openalex.org/W2620660131","https://openalex.org/W2624968784","https://openalex.org/W2630837129","https://openalex.org/W2741734981","https://openalex.org/W2790432037","https://openalex.org/W2806070179","https://openalex.org/W2883311417","https://openalex.org/W2884436604","https://openalex.org/W2900529645","https://openalex.org/W2915860004","https://openalex.org/W3098917838","https://openalex.org/W3132356259","https://openalex.org/W3175929533","https://openalex.org/W4295312788","https://openalex.org/W6639824700","https://openalex.org/W6736591718","https://openalex.org/W6766978945","https://openalex.org/W6840037434"],"related_works":["https://openalex.org/W1968069454","https://openalex.org/W1599977015","https://openalex.org/W1981755041","https://openalex.org/W1763325369","https://openalex.org/W3027415088","https://openalex.org/W2082314345","https://openalex.org/W2167236577","https://openalex.org/W3028240802","https://openalex.org/W3217478224","https://openalex.org/W4315434538"],"abstract_inverted_index":{"Eosinophilic":[0],"esophagitis":[1],"(EoE)":[2],"is":[3,78,87],"an":[4,211],"allergic":[5],"inflammatory":[6],"condition":[7],"of":[8,15,25,103,111,119,126,147,150,154,177,193,214],"the":[9,23,56,108,167,178,187,198,208],"esophagus":[10],"associated":[11],"with":[12,74,96,114,223],"elevated":[13],"numbers":[14],"eosinophils.":[16,121],"Disease":[17],"diagnosis":[18,213],"and":[19,33,51,93,152,173,184,197,216],"monitoring":[20],"require":[21],"determining":[22],"concentration":[24],"eosinophils":[26,95,113],"in":[27,156,181],"esophageal":[28],"biopsies,":[29],"a":[30,44,63,97,115,124,144],"time-consuming,":[31],"tedious":[32],"somewhat":[34],"subjective":[35],"task":[36],"currently":[37],"performed":[38],"by":[39],"pathologists.":[40],"Here,":[41],"we":[42],"developed":[43],"machine":[45],"learning":[46],"pipeline":[47],"to":[48,80,89,171,189,200],"identify,":[49],"quantitate":[50],"diagnose":[52],"EoE":[53,158,169,182,215],"patients'":[54],"at":[55],"whole":[57,82,128,202],"slide":[58,129],"image":[59],"level.":[60],"We":[61,122],"propose":[62],"platform":[64],"that":[65,77],"combines":[66],"multi-label":[67],"segmentation":[68,106],"deep":[69],"network":[70,86],"decision":[71],"support":[72],"system":[73],"dynamics":[75],"convolution":[76],"able":[79,88],"process":[81],"biopsy":[83],"slide.":[84],"Our":[85,161,205],"segment":[90],"both":[91],"intact":[92,112],"not-intact":[94],"mean":[98,116],"intersection":[99],"over":[100],"union":[101],"(mIoU)":[102],"0.93.":[104],"This":[105],"enables":[107],"local":[109],"quantification":[110],"absolute":[117],"error":[118],"0.611":[120],"examined":[123],"cohort":[125,170],"1066":[127],"images":[130],"from":[131,135],"400":[132],"patients":[133],"derived":[134],"multiple":[136],"institutions.":[137],"Using":[138],"this":[139],"set,":[140],"our":[141],"model":[142],"achieved":[143],"global":[145],"accuracy":[146],"94.75%,":[148],"sensitivity":[149],"94.13%,":[151],"specificity":[153],"95.25%":[155],"reporting":[157],"disease":[159],"activity.":[160],"work":[162],"provides":[163],"state-of-the-art":[164],"performances":[165],"on":[166],"largest":[168],"date,":[172],"successfully":[174],"addresses":[175],"two":[176],"main":[179],"challenges":[180],"diagnostics":[183],"digital":[185],"pathology,":[186],"need":[188],"detect":[190],"several":[191],"types":[192],"small":[194],"features":[195],"simultaneously,":[196],"ability":[199],"analyze":[201],"slides":[203],"efficiently.":[204],"results":[206],"pave":[207],"way":[209],"for":[210,220],"automated":[212],"can":[217],"be":[218],"utilized":[219],"other":[221],"conditions":[222],"similar":[224],"challenges.":[225]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
