{"id":"https://openalex.org/W4200224167","doi":"https://doi.org/10.1109/embc46164.2021.9630187","title":"SCOPE2: A Platform for Sars-COv-2 Primer covErage Evaluation","display_name":"SCOPE2: A Platform for Sars-COv-2 Primer covErage Evaluation","publication_year":2021,"publication_date":"2021-11-01","ids":{"openalex":"https://openalex.org/W4200224167","doi":"https://doi.org/10.1109/embc46164.2021.9630187","pmid":"https://pubmed.ncbi.nlm.nih.gov/34891723"},"language":"en","primary_location":{"id":"doi:10.1109/embc46164.2021.9630187","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc46164.2021.9630187","pdf_url":null,"source":{"id":"https://openalex.org/S4363607750","display_name":"2021 43rd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 43rd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Fan Tong","orcid":null},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Tong","raw_affiliation_strings":["Academy of Military Medical Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Military Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I2802541053"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jiangyu Li","orcid":null},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiangyu Li","raw_affiliation_strings":["Academy of Military Medical Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Military Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I2802541053"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wubin Qu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099139","display_name":"Novogene Bioinformatics Institute","ror":"https://ror.org/0105k4695","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210099139"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wubin Qu","raw_affiliation_strings":["iGeneTech Bioscience Co., Ltd, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"iGeneTech Bioscience Co., Ltd, Beijing, China","institution_ids":["https://openalex.org/I4210099139"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wei Song","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wei Song","raw_affiliation_strings":["Beijing MedPeer Information Technology Co., Ltd., Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing MedPeer Information Technology Co., Ltd., Beijing, China","institution_ids":[]}]},{"author_position":"last","author":{"id":null,"display_name":"Dongsheng Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dongsheng Zhao","raw_affiliation_strings":["Academy of Military Medical Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Military Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I2802541053"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.41796009,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"97","issue":null,"first_page":"2197","last_page":"2200"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11754","display_name":"SARS-CoV-2 detection and testing","score":0.8985000252723694,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11754","display_name":"SARS-CoV-2 detection and testing","score":0.8985000252723694,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.032999999821186066,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.02759999968111515,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/primer","display_name":"Primer (cosmetics)","score":0.8571000099182129},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5088000297546387},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.37369999289512634},{"id":"https://openalex.org/keywords/gold-standard","display_name":"Gold standard (test)","score":0.289900004863739},{"id":"https://openalex.org/keywords/automation","display_name":"Automation","score":0.2700999975204468}],"concepts":[{"id":"https://openalex.org/C2777563447","wikidata":"https://www.wikidata.org/wiki/Q7243397","display_name":"Primer (cosmetics)","level":2,"score":0.8571000099182129},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5088000297546387},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48249998688697815},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.37369999289512634},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.3682999908924103},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33180001378059387},{"id":"https://openalex.org/C40993552","wikidata":"https://www.wikidata.org/wiki/Q514654","display_name":"Gold standard (test)","level":2,"score":0.289900004863739},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.2700999975204468},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2644999921321869},{"id":"https://openalex.org/C3020001037","wikidata":"https://www.wikidata.org/wiki/Q836575","display_name":"Quality assessment","level":3,"score":0.25429999828338623}],"mesh":[{"descriptor_ui":"D000054","descriptor_name":"Acceleration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000054","descriptor_name":"Acceleration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000054","descriptor_name":"Acceleration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc46164.2021.9630187","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc46164.2021.9630187","pdf_url":null,"source":{"id":"https://openalex.org/S4363607750","display_name":"2021 43rd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 43rd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:34891723","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34891723","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1983055623","https://openalex.org/W2154588807","https://openalex.org/W2158915449","https://openalex.org/W2605343262","https://openalex.org/W2944767271","https://openalex.org/W2949297597","https://openalex.org/W3001195213","https://openalex.org/W3015444032","https://openalex.org/W3021366901","https://openalex.org/W3023031160","https://openalex.org/W3024057275","https://openalex.org/W3034943191","https://openalex.org/W3042554514","https://openalex.org/W3083866604","https://openalex.org/W3090205764","https://openalex.org/W3092136311","https://openalex.org/W3133056041","https://openalex.org/W3136605733","https://openalex.org/W6778893069","https://openalex.org/W6782481958"],"related_works":[],"abstract_inverted_index":{"Currently,":[0],"there":[1],"is":[2,31,73],"an":[3],"increasing":[4],"number":[5],"and":[6,23,77,97,108],"speed":[7],"of":[8,84,110],"SARS-CoV-2":[9,46],"mutation":[10],"taking":[11],"place":[12],"around":[13],"the":[14,34,80],"world,":[15],"posing":[16],"a":[17,53,90],"threat":[18],"to":[19,25,75],"promising":[20],"public":[21],"health":[22],"challenge":[24],"existing":[26],"diagnostic":[27],"tools.":[28],"RT-PCR":[29],"technology":[30],"recognized":[32],"as":[33],"gold":[35],"standard":[36],"diagnosing":[37],"methodology":[38],"but":[39],"has":[40],"shown":[41],"inaccuracy":[42],"under":[43],"some":[44],"mutated":[45],"circumstances.":[47],"In":[48],"this":[49],"study,":[50],"we":[51],"developed":[52],"platform":[54],"named":[55],"SCOPE2":[56,72],"(Sars-COv-2":[57],"Primer":[58,106,113],"covErage":[59],"Evaluation)":[60],"based":[61],"on":[62],"our":[63],"previous":[64],"publication.":[65],"Testing":[66],"by":[67],"commonly-used":[68],"SARS-COV-2":[69,105,112],"PCR":[70],"primers,":[71],"proved":[74],"effectively":[76],"efficiently":[78],"assess":[79],"quality":[81],"in":[82,103],"terms":[83],"detection":[85],"coverage,":[86],"which":[87],"may":[88],"provide":[89],"practical":[91],"tool":[92],"for":[93],"primer":[94,98],"selection":[95,107],"acceleration":[96],"design":[99],"improvement.Clinical":[100],"Relevance-This":[101],"assists":[102],"single":[104],"suggestion":[109],"different":[111],"combinations.":[114]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2021-12-31T00:00:00"}
