{"id":"https://openalex.org/W4200324156","doi":"https://doi.org/10.1109/embc46164.2021.9629611","title":"Open-Source Software for Real-time Calcium Imaging and Synchronized Neuron Firing Detection","display_name":"Open-Source Software for Real-time Calcium Imaging and Synchronized Neuron Firing Detection","publication_year":2021,"publication_date":"2021-11-01","ids":{"openalex":"https://openalex.org/W4200324156","doi":"https://doi.org/10.1109/embc46164.2021.9629611","pmid":"https://pubmed.ncbi.nlm.nih.gov/34891875"},"language":"en","primary_location":{"id":"doi:10.1109/embc46164.2021.9629611","is_oa":true,"landing_page_url":"https://doi.org/10.1109/embc46164.2021.9629611","pdf_url":"https://ieeexplore.ieee.org/ielx7/9629355/9629471/09629611.pdf","source":{"id":"https://openalex.org/S4363607750","display_name":"2021 43rd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 43rd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ieeexplore.ieee.org/ielx7/9629355/9629471/09629611.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Masaki Taniguchi","orcid":null},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masaki Taniguchi","raw_affiliation_strings":["Graduate School of Library, Information and Media Studies, University of Tsukuba, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Library, Information and Media Studies, University of Tsukuba, Tsukuba, Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Taro Tezuka","orcid":null},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Taro Tezuka","raw_affiliation_strings":["Faculty of Library, Information and Media Science / Center for Artificial Intelligence Research (C-AIR), University of Tsukuba, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Library, Information and Media Science / Center for Artificial Intelligence Research (C-AIR), University of Tsukuba, Tsukuba, Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Pablo Vergara","orcid":null},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I99561568","display_name":"Tsukuba International University","ror":"https://ror.org/015q2z284","country_code":"JP","type":"education","lineage":["https://openalex.org/I99561568"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Pablo Vergara","raw_affiliation_strings":["International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Japan","institution_ids":["https://openalex.org/I99561568","https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Sakthivel Srinivasan","orcid":null},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I99561568","display_name":"Tsukuba International University","ror":"https://ror.org/015q2z284","country_code":"JP","type":"education","lineage":["https://openalex.org/I99561568"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Sakthivel Srinivasan","raw_affiliation_strings":["International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Japan","institution_ids":["https://openalex.org/I99561568","https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Takuma Hosokawa","orcid":null},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I99561568","display_name":"Tsukuba International University","ror":"https://ror.org/015q2z284","country_code":"JP","type":"education","lineage":["https://openalex.org/I99561568"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takuma Hosokawa","raw_affiliation_strings":["International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Japan","institution_ids":["https://openalex.org/I99561568","https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yoan Cherasse","orcid":null},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I99561568","display_name":"Tsukuba International University","ror":"https://ror.org/015q2z284","country_code":"JP","type":"education","lineage":["https://openalex.org/I99561568"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yoan Cherasse","raw_affiliation_strings":["International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Japan","institution_ids":["https://openalex.org/I99561568","https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Toshie Naoi","orcid":null},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I99561568","display_name":"Tsukuba International University","ror":"https://ror.org/015q2z284","country_code":"JP","type":"education","lineage":["https://openalex.org/I99561568"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Toshie Naoi","raw_affiliation_strings":["International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Japan","institution_ids":["https://openalex.org/I99561568","https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Takeshi Sakurai","orcid":null},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I99561568","display_name":"Tsukuba International University","ror":"https://ror.org/015q2z284","country_code":"JP","type":"education","lineage":["https://openalex.org/I99561568"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takeshi Sakurai","raw_affiliation_strings":["International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Japan","institution_ids":["https://openalex.org/I99561568","https://openalex.org/I146399215"]}]},{"author_position":"last","author":{"id":null,"display_name":"Masanori Sakaguchi","orcid":null},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I99561568","display_name":"Tsukuba International University","ror":"https://ror.org/015q2z284","country_code":"JP","type":"education","lineage":["https://openalex.org/I99561568"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masanori Sakaguchi","raw_affiliation_strings":["International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, Tsukuba, Japan","institution_ids":["https://openalex.org/I99561568","https://openalex.org/I146399215"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2021","issue":null,"first_page":"2997","last_page":"3003"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.7202000021934509,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.7202000021934509,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10977","display_name":"Optical Imaging and Spectroscopy Techniques","score":0.050999999046325684,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.03680000081658363,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/calcium-imaging","display_name":"Calcium imaging","score":0.746999979019165},{"id":"https://openalex.org/keywords/neuron","display_name":"Neuron","score":0.6172000169754028},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6086999773979187},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5480999946594238},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5013999938964844},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.48010000586509705},{"id":"https://openalex.org/keywords/neural-activity","display_name":"Neural activity","score":0.4636000096797943},{"id":"https://openalex.org/keywords/biological-neural-network","display_name":"Biological neural network","score":0.37209999561309814}],"concepts":[{"id":"https://openalex.org/C2776032975","wikidata":"https://www.wikidata.org/wiki/Q5018833","display_name":"Calcium imaging","level":3,"score":0.746999979019165},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6887000203132629},{"id":"https://openalex.org/C2778794669","wikidata":"https://www.wikidata.org/wiki/Q43054","display_name":"Neuron","level":2,"score":0.6172000169754028},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6086999773979187},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5480999946594238},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5396000146865845},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5013999938964844},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.48010000586509705},{"id":"https://openalex.org/C2984127161","wikidata":"https://www.wikidata.org/wiki/Q969316","display_name":"Neural activity","level":2,"score":0.4636000096797943},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.42149999737739563},{"id":"https://openalex.org/C118403218","wikidata":"https://www.wikidata.org/wiki/Q43283","display_name":"Biological neural network","level":2,"score":0.37209999561309814},{"id":"https://openalex.org/C2984968299","wikidata":"https://www.wikidata.org/wiki/Q1077784","display_name":"Software tool","level":3,"score":0.3540000021457672},{"id":"https://openalex.org/C3019868978","wikidata":"https://www.wikidata.org/wiki/Q194277","display_name":"Neuronal firing","level":3,"score":0.34290000796318054},{"id":"https://openalex.org/C186565885","wikidata":"https://www.wikidata.org/wiki/Q1651163","display_name":"Biological neuron model","level":3,"score":0.3093999922275543},{"id":"https://openalex.org/C2776990819","wikidata":"https://www.wikidata.org/wiki/Q177058","display_name":"Artificial neuron","level":3,"score":0.30889999866485596},{"id":"https://openalex.org/C74254510","wikidata":"https://www.wikidata.org/wiki/Q7240508","display_name":"Premovement neuronal activity","level":2,"score":0.30630001425743103},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3046000003814697},{"id":"https://openalex.org/C519063684","wikidata":"https://www.wikidata.org/wiki/Q706","display_name":"Calcium","level":2,"score":0.29829999804496765},{"id":"https://openalex.org/C152478114","wikidata":"https://www.wikidata.org/wiki/Q660910","display_name":"Neurophysiology","level":2,"score":0.29089999198913574},{"id":"https://openalex.org/C120843803","wikidata":"https://www.wikidata.org/wiki/Q4955807","display_name":"Brain activity and meditation","level":3,"score":0.26899999380111694}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D002118","descriptor_name":"Calcium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002118","descriptor_name":"Calcium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002118","descriptor_name":"Calcium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062308","descriptor_name":"Optogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062308","descriptor_name":"Optogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062308","descriptor_name":"Optogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc46164.2021.9629611","is_oa":true,"landing_page_url":"https://doi.org/10.1109/embc46164.2021.9629611","pdf_url":"https://ieeexplore.ieee.org/ielx7/9629355/9629471/09629611.pdf","source":{"id":"https://openalex.org/S4363607750","display_name":"2021 43rd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 43rd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:34891875","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34891875","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":{"id":"doi:10.1109/embc46164.2021.9629611","is_oa":true,"landing_page_url":"https://doi.org/10.1109/embc46164.2021.9629611","pdf_url":"https://ieeexplore.ieee.org/ielx7/9629355/9629471/09629611.pdf","source":{"id":"https://openalex.org/S4363607750","display_name":"2021 43rd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 43rd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G100533045","display_name":null,"funder_award_id":"26115502","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2668456388","display_name":"Advanced Bioimaging Support","funder_award_id":"16H06280","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5030643434","display_name":null,"funder_award_id":"25116530","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5349616148","display_name":"Integration of the adult-born neurons into memory circuits during sleep","funder_award_id":"15F15408","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5380751954","display_name":"Memory trace consolidated by new-born neurons","funder_award_id":"16K18359","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5767954597","display_name":null,"funder_award_id":"16H06280","funder_id":"https://openalex.org/F4320338075","funder_display_name":"Core Research for Evolutional Science and Technology"},{"id":"https://openalex.org/G6235849075","display_name":"Extension of dictionary learning by kernel methods and its application to feature extraction from images","funder_award_id":"16K00228","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G6419033826","display_name":null,"funder_award_id":"JPMJCR1655","funder_id":"https://openalex.org/F4320338075","funder_display_name":"Core Research for Evolutional Science and Technology"},{"id":"https://openalex.org/G6542108477","display_name":null,"funder_award_id":"JPMJCR1655","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G6718509927","display_name":null,"funder_award_id":"CREST","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G701659499","display_name":null,"funder_award_id":"16H06280","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G7823901811","display_name":"Role of SRF in memory consolidation during REM sleep","funder_award_id":"19F19310","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7879866177","display_name":null,"funder_award_id":"CREST","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G8167137537","display_name":"Decoding of motor signals using non-linear generalization of sparse coding and dictionary learning","funder_award_id":"18KK0308","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8188475825","display_name":"Significance of synaptic plasticity for memory consolidation during sleep","funder_award_id":"20H03552","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320338075","display_name":"Core Research for Evolutional Science and Technology","ror":"https://ror.org/00097mb19"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4200324156.pdf","grobid_xml":"https://content.openalex.org/works/W4200324156.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1979085769","https://openalex.org/W1995360097","https://openalex.org/W2067474937","https://openalex.org/W2231009150","https://openalex.org/W2397643408","https://openalex.org/W2579604288","https://openalex.org/W2595012769","https://openalex.org/W2805271873","https://openalex.org/W2883780447","https://openalex.org/W2899242647","https://openalex.org/W2908844519","https://openalex.org/W2913083484","https://openalex.org/W2949065250","https://openalex.org/W2952986861","https://openalex.org/W2955219525","https://openalex.org/W2963943722","https://openalex.org/W3006468674","https://openalex.org/W3025414101","https://openalex.org/W3033759592","https://openalex.org/W3037108955","https://openalex.org/W3043303392","https://openalex.org/W3123127891","https://openalex.org/W6685961532","https://openalex.org/W6744173075","https://openalex.org/W6746360561"],"related_works":[],"abstract_inverted_index":{"We":[0,82],"developed":[1,69],"Carignan,":[2,122],"a":[3,33,70,84,128,142,153,160],"real-time":[4,66],"calcium":[5,29],"imaging":[6,30],"software":[7,41],"that":[8,74],"can":[9,17,124,146],"automatically":[10],"detect":[11],"activity":[12,25,100,135],"patterns":[13],"of":[14,48,51,86,117,130,152,163],"neurons.":[15],"Carignan":[16],"activate":[18,125],"an":[19],"external":[20],"device":[21],"when":[22,132],"synchronized":[23],"neural":[24,90,134],"is":[26,136],"detected":[27],"in":[28,53,65,99,115],"obtained":[31],"by":[32],"one-photon":[34],"(1p)":[35],"miniscope.":[36],"Combined":[37],"with":[38],"optogenetics,":[39],"our":[40],"enables":[42],"closed-loop":[43],"experiments":[44],"for":[45,111],"investigating":[46],"functions":[47],"specific":[49,133],"types":[50],"neurons":[52,76,131],"the":[54,118,139,150],"brain.":[55],"In":[56],"addition":[57],"to":[58,92,159],"making":[59,156],"existing":[60,107],"pattern":[61],"detection":[62,109,114],"algorithms":[63],"run":[64],"seamlessly,":[67],"we":[68],"new":[71],"classification":[72],"module":[73],"distinguishes":[75],"from":[77],"false-positives":[78],"using":[79],"deep":[80],"learning.":[81],"used":[83,148],"combination":[85],"convolutional":[87],"and":[88,96],"recurrent":[89],"networks":[91],"incorporate":[93],"both":[94],"spatial":[95],"temporal":[97],"features":[98],"patterns.":[101],"Our":[102],"method":[103],"performed":[104],"better":[105],"than":[106],"neuron":[108,113],"methods":[110],"false-positive":[112],"terms":[116],"F1":[119],"score.":[120],"Using":[121],"experimenters":[123],"or":[126],"suppress":[127],"group":[129],"observed.":[137],"Because":[138],"system":[140],"uses":[141],"1p":[143],"miniscope,":[144],"it":[145,157],"be":[147],"on":[149],"brain":[151],"freely-moving":[154],"animal,":[155],"applicable":[158],"wide":[161],"range":[162],"experimental":[164],"paradigms.":[165]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2021-12-31T00:00:00"}
